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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
240.5
nTPM
FANTOM5:
138.3
Scaled Tags Per Million
Pig:
125.2
nTPM
Allen mouse:
16.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
240.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 168.8
2188
Female, age 91, both hemispheres
180.1
2301
Female, age 85, both hemispheres
174.6
2090
Male, age 80, both hemispheres
167.5
1984
Male, age 76, both hemispheres
153.0
Dorsal cochlear nucleus nTPM: 163.8
2187
Female, age 91, both hemispheres
182.0
2802
Male, age 74, right hemisphere
178.9
2378
Male, age 80, both hemispheres
157.4
2058
Male, age 76, both hemispheres
156.0
2370
Male, age 61, both hemispheres
144.7
Dorsal tegmental nucleus nTPM: 155.9
2083
Male, age 80, both hemispheres
192.9
2326
Male, age 74, both hemispheres
164.8
1936
Male, age 76, left hemisphere
135.8
2358
Male, age 61, both hemispheres
130.0
Dorsolateral tegmental area nTPM: 153.9
2751
Female, age 85, both hemispheres
191.8
2654
Male, age 80, both hemispheres
186.3
2360
Male, age 74, both hemispheres
139.2
2141
Male, age 76, both hemispheres
138.8
2337
Male, age 61, both hemispheres
113.3
Kolliker-Fuse nucleus nTPM: 164.1
2793
Female, age 91, left hemisphere
201.7
2163
Male, age 80, both hemispheres
163.3
2315
Male, age 76, right hemisphere
127.3
Lateral lemniscal nuclei nTPM: 211.1
2169
Male, age 76, both hemispheres
237.0
2036
Male, age 80, both hemispheres
216.5
2746
Female, age 85, left hemisphere
216.5
2453
Male, age 74, right hemisphere
194.9
2320
Female, age 91, left hemisphere
190.7
Lateral parabrachial nucleus nTPM: 185.0
2139
Female, age 85, right hemisphere
214.8
2013
Male, age 80, both hemispheres
191.1
2790
Male, age 61, both hemispheres
183.8
2792
Male, age 76, both hemispheres
150.1
Lateral vestibular nucleus nTPM: 169.5
2311
Male, age 80, both hemispheres
173.5
2184
Male, age 76, both hemispheres
165.4
Locus coeruleus nTPM: 184.8
2014
Male, age 55, unknown
214.6
2123
Female, age 91, both hemispheres
199.5
1980
Male, age 76, both hemispheres
193.2
2720
Male, age 74, both hemispheres
182.1
2317
Female, age 72, unknown
178.3
2162
Male, age 80, both hemispheres
169.2
2788
Male, age 74, unknown
156.8
Medial parabrachial nucleus nTPM: 183.0
2170
Female, age 91, both hemispheres
212.1
2463
Female, age 85, right hemisphere
200.8
2854
Male, age 80, both hemispheres
180.8
2156
Male, age 61, both hemispheres
166.1
2786
Male, age 76, both hemispheres
155.1
Medial periolivary nuclei nTPM: 206.5
2063
Male, age 76, both hemispheres
259.8
2171
Female, age 85, both hemispheres
226.6
2791
Male, age 74, right hemisphere
200.7
2458
Female, age 91, both hemispheres
176.5
2081
Male, age 80, both hemispheres
169.0
Motor facial nucleus nTPM: 201.6
2062
Male, age 76, both hemispheres
277.7
2365
Male, age 74, right hemisphere
216.4
2795
Female, age 91, both hemispheres
183.5
2126
Male, age 61, both hemispheres
180.1
2697
Female, age 85, both hemispheres
178.7
2327
Male, age 80, both hemispheres
173.5
Motor trigeminal nucleus nTPM: 175.4
2560
Male, age 74, both hemispheres
223.5
2079
Male, age 80, both hemispheres
177.0
2321
Female, age 91, both hemispheres
172.0
2335
Male, age 61, both hemispheres
154.1
2309
Male, age 76, both hemispheres
150.1
Nuclei of the trapezoid body nTPM: 222.7
2159
Male, age 61, both hemispheres
261.5
2735
Female, age 85, both hemispheres
241.6
1983
Male, age 76, both hemispheres
240.2
2166
Male, age 80, both hemispheres
193.0
2368
Female, age 91, both hemispheres
177.4
Nucleus raphe magnus nTPM: 217.6
2160
Male, age 61, both hemispheres
275.9
2172
Female, age 85, both hemispheres
232.3
2051
Male, age 76, both hemispheres
213.8
2455
Male, age 74, both hemispheres
210.9
2328
Male, age 80, both hemispheres
187.3
2459
Female, age 91, both hemispheres
185.1
Paramedian reticular nucleus nTPM: 179.1
2050
Female, age 85, both hemispheres
215.9
2057
Male, age 80, both hemispheres
186.2
2313
Male, age 61, both hemispheres
176.1
2052
Male, age 76, both hemispheres
138.2
Pedunculopontine tegmental nucleus nTPM: 148.9
2334
Male, age 80, both hemispheres
160.6
1921
Female, age 85, both hemispheres
160.5
2338
Male, age 61, both hemispheres
125.6
Pontine nuclei nTPM: 240.5
2787
Female, age 85, both hemispheres
297.7
1863
Male, age 55, unknown
276.3
2109
Female, age 72, unknown
261.4
1968
Male, age 76, left hemisphere
246.9
2727
Male, age 61, right hemisphere
245.9
2454
Male, age 74, left hemisphere
236.8
2319
Female, age 91, both hemispheres
190.9
2115
Male, age 80, left hemisphere
168.2
Pontine raphe nucleus nTPM: 189.4
2122
Female, age 85, midline
212.2
2853
Male, age 76, midline
166.5
Posteroventral cochlear nucleus nTPM: 163.2
2070
Male, age 76, both hemispheres
168.2
2752
Female, age 85, both hemispheres
166.9
2135
Female, age 91, both hemispheres
166.8
2341
Male, age 80, both hemispheres
158.1
2371
Male, age 61, both hemispheres
156.2
Principal sensory trigeminal nucleus nTPM: 203.7
2158
Male, age 61, both hemispheres
265.1
2008
Male, age 80, left hemisphere
209.9
2367
Female, age 91, left hemisphere
191.9
2324
Male, age 76, both hemispheres
148.0
Reticular pontine nucleus, caudal nTPM: 201.5
2559
Male, age 74, both hemispheres
215.7
2092
Male, age 76, both hemispheres
211.7
2457
Female, age 91, both hemispheres
194.3
2332
Male, age 80, right hemisphere
184.2
Reticular pontine nucleus, oral nTPM: 203.5
2361
Male, age 74, both hemispheres
262.2
2012
Female, age 85, both hemispheres
209.2
1939
Male, age 80, both hemispheres
186.3
2366
Female, age 91, both hemispheres
185.4
2167
Male, age 76, both hemispheres
174.5
Reticulotegmental nucleus nTPM: 170.1
2452
Male, age 74, both hemispheres
183.2
2325
Male, age 76, both hemispheres
174.0
2322
Female, age 91, both hemispheres
165.3
2333
Male, age 80, both hemispheres
157.9
Spinal trigeminal nucleus, oral nTPM: 162.3
2164
Male, age 80, both hemispheres
172.0
2737
Female, age 85, both hemispheres
158.5
1978
Male, age 76, both hemispheres
156.3
Subcoeruleus area nTPM: 177.6
2089
Male, age 76, left hemisphere
197.2
2369
Female, age 85, left hemisphere
188.2
1958
Male, age 80, both hemispheres
180.9
2323
Female, age 91, left hemisphere
165.7
2451
Male, age 74, both hemispheres
155.9
Superior olive nTPM: 209.2
1875
Female, age 85, both hemispheres
246.1
2020
Male, age 76, both hemispheres
225.2
2364
Male, age 74, right hemisphere
211.9
2329
Male, age 80, right hemisphere
181.5
2561
Female, age 91, both hemispheres
181.2
Ventral periolivary nuclei nTPM: 196.1
2130
Female, age 85, both hemispheres
213.6
2023
Male, age 76, both hemispheres
209.3
2165
Male, age 80, both hemispheres
208.9
2794
Female, age 91, left hemisphere
152.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 189.8
1959
Male, age 76, both hemispheres
216.5
2449
Male, age 74, both hemispheres
206.9
2456
Female, age 91, both hemispheres
195.9
2161
Male, age 80, both hemispheres
181.5
2840
Female, age 85, both hemispheres
176.8
2359
Male, age 61, both hemispheres
160.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.2
Pig sample
Sample description
nTPM
Pons nTPM: 125.2
Samples: 4
Max nTPM: 144.9
Min nTPM: 98.0
Sample A
Female
144.9
Sample B
Female
98.0
Sample C
Male
114.6
Sample D
Male
143.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
