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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:182.1 nTPM
HPA:126.4 nTPM
GTEx:182.1 nTPM
FANTOM5:232.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA054097
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.4
overview
Male, age 65
Small intestine sample 232
nTPM: 83.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 119.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 150.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 152.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 182.1
Samples: 187

Max nTPM: 945.8
Min nTPM: 36.2
Std nTPM: 132.3
Median nTPM: 138.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 945.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 656.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 550.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 526.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 520.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 463.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 463.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 452.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 445.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 444.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 437.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 433.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 393.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 386.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 381.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 377.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 376.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 362.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 357.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 352.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 351.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 343.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 343.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 333.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 332.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 328.9
GTEX-1192X-2526-SM-59868 50-59 years, male 313.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 306.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 301.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 300.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 299.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 294.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 286.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 286.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 284.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 279.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 278.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 277.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 273.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 272.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 268.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 265.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 260.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 257.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 251.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 246.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 245.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 242.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 236.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 236.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 235.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 235.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 229.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 229.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 226.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 225.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 220.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 210.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 209.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 208.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 207.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 200.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 199.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 198.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 198.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 197.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 195.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 194.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 194.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 189.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 186.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 184.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 184.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 179.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 177.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 176.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 174.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 173.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 164.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 163.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 162.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 161.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 152.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 149.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 149.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 146.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 146.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 144.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 143.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 143.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 141.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 141.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 139.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 138.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 136.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 136.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 136.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 133.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 133.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 131.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 130.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 128.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 128.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 127.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 126.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 126.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 125.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 124.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 123.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 122.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 115.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 114.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 113.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 113.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 112.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 109.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 108.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 108.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 107.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 106.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 105.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 105.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 105.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 104.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 103.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 102.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 100.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 100.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 99.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 95.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 93.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 92.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 91.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 89.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 87.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 84.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 84.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 83.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 82.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 81.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 80.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 79.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 79.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 78.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 78.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 76.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 74.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 73.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 72.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 72.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 71.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 71.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 69.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 68.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 68.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 68.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 67.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 67.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 67.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 66.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 66.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 65.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 65.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 65.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 64.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 64.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 62.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 62.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 62.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 60.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 60.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 59.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 58.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 57.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 56.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 54.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 53.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 53.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 51.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 51.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 47.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 47.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 46.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 43.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 39.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 36.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

232.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 232.8
FF:10024-101D6 15,40,85 years, mixed 232.8

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