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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:236.6 nTPM
GTEx:236.6 nTPM
FANTOM5:389.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA054097
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 236.6
Samples: 156

Max nTPM: 1239.5
Min nTPM: 25.7
Std nTPM: 199.8
Median nTPM: 172.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1239.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 961.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 922.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 713.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 706.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 698.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 670.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 660.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 645.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 580.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 558.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 558.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 554.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 541.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 526.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 520.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 518.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 491.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 461.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 450.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 442.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 438.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 433.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 430.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 412.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 404.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 398.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 398.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 386.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 383.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 380.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 372.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 369.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 343.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 323.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 322.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 320.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 319.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 314.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 309.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 300.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 296.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 296.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 290.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 289.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 287.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 274.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 269.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 268.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 267.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 261.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 252.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 243.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 239.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 237.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 237.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 234.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 234.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 232.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 231.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 224.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 222.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 221.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 215.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 215.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 215.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 204.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 200.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 198.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 197.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 196.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 192.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 188.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 186.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 185.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 182.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 173.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 173.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 171.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 164.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 162.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 161.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 159.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 157.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 156.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 148.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 147.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 147.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 146.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 144.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 142.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 140.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 138.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 137.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 135.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 133.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 131.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 130.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 124.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 123.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 119.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 119.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 117.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 117.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 116.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 115.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 114.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 113.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 109.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 108.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 106.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 105.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 104.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 103.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 102.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 102.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 99.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 98.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 92.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 92.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 91.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 90.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 87.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 87.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 87.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 83.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 80.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 79.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 79.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 77.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 77.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 76.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 76.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 76.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 73.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 70.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 68.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 67.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 65.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 65.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 60.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 58.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 57.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 56.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 50.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 40.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 39.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 39.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 38.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 38.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 35.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 32.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 31.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 29.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 28.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 25.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

389.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 389.5
FF:10204-103F6 68 years, female 389.5

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