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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:137.7 nTPM
HPA Brain:134.2 nTPM
GTEx:137.7 nTPM
FANTOM5:290.9 Scaled Tags Per Million
Pig:96.2 nTPM
Mouse:217.2 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.2
Sample id Sample description nTPM
Amygdala
nTPM: 134.2
2814 Male, age 76, right hemisphere 149.4
1987 Female, age 91, left hemisphere 143.1
2695 Female, age 67, right hemisphere 137.1
2514 Male, age 75, right hemisphere 132.1
2517 Female, age 94, left hemisphere 108.9
Basal amygdala
nTPM: 97.2
2110 Male, age 80, left hemisphere 112.2
1955 Male, age 76, both hemispheres 110.7
2609 Male, age 75, right hemisphere 93.5
2243 Female, age 91, right hemisphere 92.3
2685 Female, age 94, left hemisphere 92.3
2827 Female, age 67, right hemisphere 81.9
Central amygdala
nTPM: 103.6
1905 Male, age 76, both hemispheres 120.5
2515 Male, age 75, right hemisphere 110.0
2701 Female, age 91, right hemisphere 103.0
2239 Male, age 80, left hemisphere 101.8
2826 Female, age 94, left hemisphere 82.4
Corticomedial amygdala
nTPM: 104.7
2829 Male, age 80, left hemisphere 116.5
2240 Male, age 76, both hemispheres 114.6
2429 Female, age 94, left hemisphere 109.5
2242 Female, age 91, right hemisphere 109.2
2428 Male, age 75, right hemisphere 97.3
2535 Female, age 67, right hemisphere 81.2
Lateral amygdala
nTPM: 102.2
1883 Male, age 76, both hemispheres 133.1
2516 Male, age 75, right hemisphere 115.2
2256 Male, age 80, left hemisphere 107.8
2534 Female, age 94, left hemisphere 95.2
2830 Female, age 67, right hemisphere 83.7
2255 Female, age 91, right hemisphere 78.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.7
Samples: 152

Max nTPM: 547.4
Min nTPM: 66.6
Std nTPM: 74.4
Median nTPM: 117.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 547.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 532.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 481.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 406.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 385.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 336.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 320.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 255.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 241.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 221.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 211.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 211.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 207.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 200.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 198.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 190.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 187.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 184.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 177.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 173.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 169.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 155.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 153.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 145.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 145.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 144.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 142.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 142.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 141.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 141.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 138.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 138.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 138.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 138.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 137.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 137.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 134.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 133.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 132.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 132.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 129.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 128.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 127.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 127.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 126.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 125.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 123.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 122.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 122.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 122.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 119.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 119.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 119.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 118.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 117.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 117.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 116.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 115.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 115.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 113.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 111.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 110.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 109.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 108.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 108.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 108.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 107.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 107.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 107.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 107.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 106.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 105.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 105.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 105.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 104.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 103.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 103.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 103.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 102.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 101.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 101.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 100.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 100.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 98.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 97.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 96.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 95.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 94.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 94.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 93.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 92.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 89.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 88.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 87.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 86.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 84.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 83.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 74.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 73.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 70.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

290.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 290.9
FF:10151-102I7 76 years, female 290.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.2
Pig sample Sample description nTPM
Amygdala
nTPM: 96.3
Samples: 4

Max nTPM: 112.6
Min nTPM: 80.5
Sample A Female 112.6
Sample B Female 93.4
Sample C Male 80.5
Sample D Male 98.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 217.2
Samples: 4

Max nTPM: 230.8
Min nTPM: 202.2
Sample A Male 211.5
Sample B Male 202.2
Sample C Female 224.4
Sample D Female 230.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
79393537 Antisense, RP_071018_02_B03, Mouse strain C57BL/6J (56 days, male) 23.0
75042251 Antisense, RP_060412_02_C05, Mouse strain C57BL/6J (56 days, male) 21.0

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