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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:212.9 nTPM
HPA Brain:181.8 nTPM
GTEx:212.9 nTPM
FANTOM5:356.6 Scaled Tags Per Million
Pig:131.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 167.3
1981 Female, age 72, midline 203.5
2048 Male, age 55, midline 172.3
2816 Male, age 47, midline 157.1
2565 Male, age 75, midline 156.7
2194 Female, age 79, both hemispheres 146.9
Cervical spinal cord, dorsal horn
nTPM: 181.8
2296 Male, age 66, both hemispheres 245.9
2173 Female, age 72, unknown 215.9
2069 Male, age 47, both hemispheres 209.3
1877 Male, age 55, unknown 149.4
2721 Male, age 90, both hemispheres 136.0
2297 Male, age 75, both hemispheres 134.1
Cervical spinal cord, ventral horn
nTPM: 177.4
2098 Female, age 72, unknown 221.9
2809 Male, age 90, both hemispheres 210.0
2480 Male, age 75, both hemispheres 198.2
2068 Male, age 55, unknown 163.4
2295 Male, age 66, both hemispheres 143.6
2820 Female, age 79, both hemispheres 127.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 212.9
Samples: 159

Max nTPM: 641.2
Min nTPM: 116.8
Std nTPM: 90.1
Median nTPM: 190.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 641.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 626.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 571.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 545.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 453.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 437.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 437.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 433.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 424.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 413.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 405.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 364.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 347.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 344.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 321.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 315.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 304.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 289.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 275.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 272.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 271.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 251.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 251.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 243.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 243.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 243.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 241.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 241.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 238.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 238.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 237.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 234.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 233.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 231.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 229.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 227.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 226.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 226.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 221.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 219.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 219.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 218.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 218.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 216.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 215.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 214.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 214.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 213.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 213.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 213.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 213.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 211.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 210.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 210.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 209.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 209.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 208.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 207.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 207.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 206.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 206.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 206.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 206.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 205.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 204.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 203.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 201.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 201.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 200.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 199.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 196.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 196.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 195.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 192.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 192.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 191.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 190.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 190.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 189.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 188.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 188.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 187.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 184.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 184.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 183.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 181.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 180.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 178.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 178.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 178.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 176.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 176.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 175.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 173.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 173.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 172.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 171.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 170.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 168.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 168.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 168.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 168.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 167.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 167.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 165.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 165.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 164.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 163.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 163.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 163.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 163.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 162.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 162.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 161.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 160.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 159.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 158.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 158.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 157.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 155.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 153.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 153.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 153.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 153.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 152.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 149.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 149.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 149.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 145.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 145.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 144.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 144.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 142.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 139.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 138.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 137.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 137.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 136.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 135.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 134.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 133.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 132.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 126.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 125.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 119.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 116.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 356.6
FF:10159-103A6 76 years, female 362.0
FF:10181-103D1 60 years, female 351.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 131.1
Samples: 4

Max nTPM: 144.5
Min nTPM: 112.8
Sample A Female 112.8
Sample B Female 138.6
Sample C Male 144.5
Sample D Male 128.6
Ventral spinal cord
nTPM: 117.3
Samples: 4

Max nTPM: 129.2
Min nTPM: 107.3
Sample A Female 119.9
Sample B Female 107.3
Sample C Male 112.8
Sample D Male 129.2

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