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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10.9 nTPM
HPA Brain:363.3 nTPM
GTEx:10.9 nTPM
FANTOM5:834.8 Scaled Tags Per Million
Pig:163.4 nTPM
Mouse:229.4 nTPM
Allen mouse:1.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.3
Sample id Sample description nTPM
Amygdala
nTPM: 363.3
2514 Male, age 75, right hemisphere 542.5
2695 Female, age 67, right hemisphere 478.1
2814 Male, age 76, right hemisphere 348.3
1987 Female, age 91, left hemisphere 254.5
2517 Female, age 94, left hemisphere 193.2
Basal amygdala
nTPM: 194.1
1955 Male, age 76, both hemispheres 274.3
2609 Male, age 75, right hemisphere 240.0
2110 Male, age 80, left hemisphere 216.8
2827 Female, age 67, right hemisphere 177.1
2685 Female, age 94, left hemisphere 128.3
2243 Female, age 91, right hemisphere 128.0
Central amygdala
nTPM: 256.5
2515 Male, age 75, right hemisphere 343.5
2826 Female, age 94, left hemisphere 299.2
1905 Male, age 76, both hemispheres 293.7
2701 Female, age 91, right hemisphere 178.7
2239 Male, age 80, left hemisphere 167.3
Corticomedial amygdala
nTPM: 221.7
2428 Male, age 75, right hemisphere 390.9
2240 Male, age 76, both hemispheres 286.8
2242 Female, age 91, right hemisphere 191.1
2429 Female, age 94, left hemisphere 189.6
2829 Male, age 80, left hemisphere 139.2
2535 Female, age 67, right hemisphere 132.7
Lateral amygdala
nTPM: 253.9
2830 Female, age 67, right hemisphere 305.4
1883 Male, age 76, both hemispheres 298.6
2516 Male, age 75, right hemisphere 289.2
2534 Female, age 94, left hemisphere 274.7
2256 Male, age 80, left hemisphere 218.3
2255 Female, age 91, right hemisphere 137.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 10.9
Samples: 152

Max nTPM: 95.4
Min nTPM: 0.8
Std nTPM: 10.4
Median nTPM: 8.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 95.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 46.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 39.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 33.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 28.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 28.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 25.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 24.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 23.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 22.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 22.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 20.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 20.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 19.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 19.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 19.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 18.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 17.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 16.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 16.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 16.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 14.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 14.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 14.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 13.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 13.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 13.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 13.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 13.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 13.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 13.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 11.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 11.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 11.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 11.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 11.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 11.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 11.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 10.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 10.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 10.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 10.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 10.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 10.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 10.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 10.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 10.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 10.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 10.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 10.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 10.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 9.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 9.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 9.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 9.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 9.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 9.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 8.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 8.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 8.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 8.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 8.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 8.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 8.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 8.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 8.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 7.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 7.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 7.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 7.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 7.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 7.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 6.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 6.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 6.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 6.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 6.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 6.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 6.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 6.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 6.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 5.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 5.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 5.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 5.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 5.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 5.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 5.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 5.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 5.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 5.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 5.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 4.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 4.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 4.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 4.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 4.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 4.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 3.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 3.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 3.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 0.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 0.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

834.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 834.8
FF:10151-102I7 76 years, female 834.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.4
Pig sample Sample description nTPM
Amygdala
nTPM: 163.4
Samples: 4

Max nTPM: 202.2
Min nTPM: 109.4
Sample A Female 202.2
Sample B Female 189.2
Sample C Male 152.8
Sample D Male 109.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 229.5
Samples: 4

Max nTPM: 269.7
Min nTPM: 193.4
Sample A Male 193.4
Sample B Male 204.9
Sample C Female 269.7
Sample D Female 249.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 1.4
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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