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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.9 nTPM
GTEx:134.9 nTPM
FANTOM5:2144.2 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:154.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 134.9
Samples: 105

Max nTPM: 392.7
Min nTPM: 6.9
Std nTPM: 60.8
Median nTPM:
137_1 83 years, male 392.7
491_1 89 years, female 322.9
41_1 94 years, female 304.8
117_1 61 years, male 302.3
490_1 67 years, female 287.2
307_1 66 years, female 256.3
42_1 85 years, male 233.6
351_1 91 years, male 216.9
452_1 88 years, female 214.1
2_1 77 years, female 205.9
17_1 71 years, male 203.3
162_1 79 years, female 195.9
501_1 88 years, male 195.0
314_1 67 years, male 193.2
526_1 61 years, male 192.8
308_1 70 years, female 190.2
145_1 84 years, male 188.5
109_1 81 years, female 184.8
265_1 87 years, male 183.7
384_1 83 years, male 182.7
414_1 84 years, female 180.0
4_1 88 years, female 179.5
495_1 57 years, female 170.1
480_1 63 years, male 165.8
313_1 79 years, female 163.6
311_1 78 years, male 163.1
119_1 70 years, female 160.7
315_1 62 years, female 160.4
6_1 73 years, female 159.5
354_1 81 years, female 154.9
189_1 76 years, male 151.0
254_1 77 years, female 147.9
126_1 63 years, male 147.7
89_1 63 years, male 146.6
322_1 76 years, male 144.9
518_1 75 years, female 140.7
406_1 79 years, male 139.8
18_1 88 years, male 139.2
499_1 55 years, female 136.3
237_1 82 years, male 136.2
264_1 73 years, female 135.2
99_1 64 years, male 134.2
120_1 70 years, female 131.9
142_1 61 years, female 131.6
217_1 76 years, male 130.2
415_1 77 years, female 129.9
320_1 89 years, female 128.9
447_1 81 years, male 126.2
115_1 83 years, male 123.9
389_1 86 years, female 123.5
317_1 60 years, male 123.0
9_1 66 years, female 122.5
288_1 66 years, female 122.0
149_1 88 years, male 120.3
468_1 89 years, male 119.3
324_1 76 years, male 118.9
32_1 67 years, male 118.0
293_1 68 years, female 118.0
319_1 81 years, male 117.7
466_1 57 years, female 115.1
350_1 84 years, female 113.1
139_1 64 years, female 112.2
153_1 70 years, female 111.5
506_1 65 years, male 110.4
376_1 75 years, female 108.7
503_1 68 years, male 108.3
35_1 74 years, female 105.3
173_1 67 years, male 105.3
291_1 76 years, male 104.0
266_1 85 years, male 102.4
349_1 83 years, male 100.9
353_1 82 years, female 100.7
172_1 72 years, female 99.9
405_1 91 years, male 99.7
81_1 67 years, male 99.2
347_1 72 years, male 98.9
396_1 62 years, male 96.9
413_1 59 years, female 95.4
43_1 64 years, female 94.6
377_1 82 years, female 93.8
321_1 62 years, female 92.6
316_1 62 years, male 92.3
379_1 60 years, male 90.4
251_1 78 years, male 89.8
295_1 61 years, female 89.4
517_1 88 years, male 88.7
286_1 68 years, female 87.6
243_1 75 years, male 86.2
218_1 71 years, female 85.2
386_1 76 years, male 85.1
348_1 84 years, male 83.6
318_1 68 years, male 81.8
335_1 73 years, female 77.3
425_1 59 years, female 77.0
177_1 74 years, male 76.6
355_1 70 years, female 76.5
356_1 87 years, female 75.2
292_1 71 years, male 71.0
404_1 82 years, female 65.7
352_1 62 years, male 61.2
163_1 78 years, male 60.0
229_1 69 years, female 59.5
394_1 75 years, female 58.2
246_1 77 years, male 55.2
375_1 74 years, female 6.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2144.2
FF:10030-101E3 24-65 years, mixed 2144.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.7
Pig sample Sample description nTPM
Retina
nTPM: 20.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 17.6
Sample A Female 19.6
Sample B Female 25.8
Sample C Male 17.6
Sample D Male 19.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.6
Mouse sample Sample description nTPM
Retina
nTPM: 154.6
Samples: 4

Max nTPM: 202.3
Min nTPM: 127.5
Sample A Male 153.7
Sample B Male 127.5
Sample C Female 202.3
Sample D Female 134.8

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