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  • TSC22D4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:579.9 nTPM
FANTOM5:378.1 Scaled Tags Per Million
Pig:81.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006757
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

579.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 579.9
Samples: 246

Max nTPM: 1441.3
Min nTPM: 100.0
Std nTPM: 262.4
Median nTPM: 534.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1441.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1417.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1324.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1307.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1307.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1263.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1260.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1219.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1178.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1172.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1081.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1080.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1073.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1060.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1041.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1014.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1008.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1004.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1003.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 998.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 988.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 970.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 955.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 942.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 933.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 928.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 924.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 924.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 908.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 900.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 894.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 884.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 878.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 865.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 863.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 857.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 849.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 846.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 845.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 834.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 831.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 818.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 817.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 812.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 809.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 807.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 803.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 791.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 791.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 783.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 781.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 780.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 780.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 771.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 765.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 763.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 763.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 742.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 742.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 739.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 736.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 732.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 731.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 721.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 717.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 714.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 709.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 705.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 704.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 702.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 701.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 696.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 690.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 689.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 689.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 688.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 686.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 686.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 680.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 674.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 671.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 670.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 667.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 662.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 660.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 652.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 651.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 650.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 635.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 635.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 634.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 632.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 630.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 627.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 626.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 626.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 622.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 620.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 616.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 613.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 612.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 612.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 611.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 611.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 606.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 602.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 598.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 587.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 570.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 567.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 566.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 559.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 559.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 556.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 554.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 553.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 553.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 551.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 549.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 542.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 538.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 537.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 536.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 532.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 532.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 531.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 528.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 517.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 516.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 504.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 491.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 488.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 484.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 478.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 477.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 476.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 474.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 471.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 470.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 468.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 466.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 462.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 459.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 456.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 455.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 454.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 454.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 453.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 453.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 452.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 449.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 446.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 446.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 446.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 445.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 444.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 443.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 442.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 442.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 439.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 438.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 434.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 433.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 430.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 430.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 427.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 426.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 424.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 423.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 422.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 421.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 419.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 416.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 414.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 412.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 412.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 405.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 404.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 399.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 398.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 394.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 388.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 387.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 385.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 383.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 381.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 375.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 374.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 372.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 362.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 362.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 359.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 359.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 358.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 355.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 349.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 348.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 347.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 344.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 339.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 339.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 335.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 330.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 329.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 326.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 325.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 325.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 322.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 318.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 317.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 316.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 307.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 305.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 303.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 299.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 293.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 293.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 291.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 291.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 290.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 287.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 285.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 285.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 285.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 282.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 276.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 274.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 267.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 266.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 263.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 263.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 262.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 260.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 255.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 245.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 245.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 245.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 245.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 231.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 224.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 224.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 221.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 178.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 161.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 100.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

378.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 378.1
FF:10164-103B2 76 years, female 378.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.4
Pig sample Sample description nTPM
Caudate
nTPM: 81.4
Samples: 4

Max nTPM: 92.5
Min nTPM: 66.1
Sample A Female 66.1
Sample B Female 92.5
Sample C Male 91.1
Sample D Male 75.9

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