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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:735.0 nTPM
HPA Brain:634.2 nTPM
GTEx:735.0 nTPM
FANTOM5:686.3 Scaled Tags Per Million
Pig:258.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

634.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 537.1
1981 Female, age 72, midline 621.4
2194 Female, age 79, both hemispheres 559.5
2048 Male, age 55, midline 541.9
2816 Male, age 47, midline 490.8
2565 Male, age 75, midline 472.0
Cervical spinal cord, dorsal horn
nTPM: 514.0
2173 Female, age 72, unknown 767.7
1877 Male, age 55, unknown 505.7
2296 Male, age 66, both hemispheres 502.8
2721 Male, age 90, both hemispheres 455.0
2069 Male, age 47, both hemispheres 446.0
2297 Male, age 75, both hemispheres 406.7
Cervical spinal cord, ventral horn
nTPM: 634.2
2295 Male, age 66, both hemispheres 746.1
2809 Male, age 90, both hemispheres 718.2
2068 Male, age 55, unknown 612.1
2480 Male, age 75, both hemispheres 609.3
2098 Female, age 72, unknown 590.1
2820 Female, age 79, both hemispheres 529.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

735.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 735.0
Samples: 159

Max nTPM: 1430.1
Min nTPM: 210.6
Std nTPM: 245.1
Median nTPM: 724.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1430.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1312.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1269.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1249.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1223.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1187.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1184.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1173.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1152.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1135.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1123.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1122.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1107.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1098.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1087.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1077.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1073.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1071.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1068.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1066.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1050.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1029.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1023.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1017.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1015.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 998.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 997.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 977.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 976.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 974.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 969.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 967.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 963.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 962.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 948.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 946.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 941.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 930.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 924.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 921.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 898.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 896.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 871.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 866.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 863.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 820.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 819.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 818.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 816.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 815.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 808.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 804.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 804.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 803.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 803.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 797.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 791.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 778.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 775.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 767.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 763.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 763.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 762.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 761.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 761.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 760.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 755.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 754.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 753.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 750.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 749.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 748.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 740.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 740.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 733.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 731.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 728.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 726.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 726.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 724.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 723.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 722.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 721.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 720.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 717.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 707.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 707.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 706.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 706.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 705.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 696.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 696.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 691.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 677.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 676.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 672.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 664.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 663.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 656.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 655.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 649.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 647.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 645.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 640.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 634.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 630.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 625.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 623.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 617.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 617.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 614.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 607.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 605.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 590.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 589.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 583.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 574.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 570.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 553.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 547.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 545.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 543.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 542.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 534.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 530.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 530.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 529.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 523.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 506.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 502.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 489.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 489.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 488.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 488.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 478.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 464.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 457.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 455.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 450.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 443.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 438.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 437.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 432.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 424.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 416.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 415.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 400.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 381.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 373.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 366.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 359.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 332.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 325.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 319.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 288.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 281.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 262.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 242.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 210.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

686.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 686.3
FF:10181-103D1 60 years, female 878.6
FF:10159-103A6 76 years, female 494.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 199.8
Samples: 4

Max nTPM: 211.5
Min nTPM: 190.6
Sample A Female 190.6
Sample B Female 211.5
Sample C Male 202.1
Sample D Male 195.1
Ventral spinal cord
nTPM: 258.1
Samples: 4

Max nTPM: 270.9
Min nTPM: 247.8
Sample A Female 251.2
Sample B Female 270.9
Sample C Male 247.8
Sample D Male 262.5

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