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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

83.935
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:37.5 nTPM
FANTOM5:23.9 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:43.6 nTPM

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078782
Thalamus mean intensity 83.935
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 30.463
Parafascicular thalamic nucleus 38.424
Pregeniculate nucleus 39.190
Stria terminalis 45.280
Zona incerta 52.879
Anterodorsal thalamic nucleus 52.425
Reticular thalamic nucleus 37.366
Vental anterior thalamic nucleus 27.714
Medial habenular nucleus 50.793
Laterodorsal thalamic area 41.222
Paraventricular thalamic nucleus 74.642
Central medial thalamic area 64.546
Ventral lateral thalamic area -
Ventral medial thalamic area 44.093
Lateral habenulal nucleus 35.642
Ventral posterior thalamus 20.539
Anterior pretactal nucleus 34.637
Retromammillary nucleus 27.451

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 12.6
2497 Male, age 66, unknown 17.5
2032 Female, age 42, unknown 14.8
2396 Male, age 61, right hemisphere 5.3
Centromedial thalamic nucleus
nTPM: 37.5
2279 Female, age 85, left hemisphere 57.9
2401 Male, age 76, right hemisphere 17.0
Habenula
nTPM: 17.6
2203 Male, age 61, left hemisphere 24.1
2252 Male, age 62, unknown 19.1
2276 Male, age 66, unknown 17.8
1957 Male, age 80, both hemispheres 9.4
Lateral geniculate body
nTPM: 16.6
1953 Male, age 62, unknown 28.9
2106 Female, age 67, right hemisphere 23.0
2399 Male, age 61, left hemisphere 15.1
2035 Female, age 72, unknown 14.8
2575 Female, age 94, right hemisphere 14.6
2857 Male, age 74, right hemisphere 13.9
2659 Male, age 66, unknown 12.2
2841 Male, age 80, both hemispheres 10.3
Lateral thalamic nuclei
nTPM: 18.1
2573 Female, age 94, left hemisphere 29.1
2661 Female, age 72, unknown 19.4
1903 Male, age 76, left hemisphere 15.7
2765 Female, age 67, both hemispheres 14.1
2577 Male, age 74, both hemispheres 12.0
Medial dorsal thalamic nucleus
nTPM: 19.2
2498 Male, age 66, unknown 27.7
2572 Female, age 94, right hemisphere 27.7
2402 Female, age 67, both hemispheres 26.5
2283 Male, age 80, right hemisphere 23.2
2660 Female, age 72, unknown 23.1
1859 Male, age 76, both hemispheres 22.7
1810 Male, age 48, unknown 21.3
2039 Female, age 72, unknown 18.2
1930 Female, age 42, unknown 16.8
2026 Male, age 62, unknown 13.7
1971 Male, age 61, right hemisphere 11.3
2576 Male, age 74, both hemispheres 9.0
2492 Male, age 75, right hemisphere 8.8
Medial geniculate body
nTPM: 31.7
2049 Male, age 76, both hemispheres 56.9
2571 Male, age 75, right hemisphere 38.8
2217 Female, age 72, unknown 33.6
1811 Female, age 42, unknown 31.8
2650 Female, age 94, left hemisphere 26.2
2207 Male, age 80, right hemisphere 17.8
2657 Male, age 74, right hemisphere 17.1
Nucleus reuniens
nTPM: 28.2
2205 Male, age 80, left hemisphere 45.3
2212 Female, age 67, left hemisphere 30.4
2210 Female, age 85, left hemisphere 9.0
Nucleus rhomboideus
nTPM: 14.0
2280 Female, age 85, left hemisphere 17.5
2213 Female, age 67, left hemisphere 13.5
2206 Male, age 80, both hemispheres 11.1
Posterior thalamic nucleus
nTPM: 28.3
2495 Female, age 67, right hemisphere 42.6
2266 Male, age 76, right hemisphere 24.5
2649 Female, age 94, both hemispheres 24.0
2655 Male, age 74, right hemisphere 22.0
Pulvinar
nTPM: 20.4
2582 Female, age 72, unknown 33.1
2496 Female, age 67, right hemisphere 32.7
2214 Male, age 76, right hemisphere 30.8
2499 Male, age 66, unknown 19.7
1929 Male, age 48, unknown 16.9
1972 Male, age 62, unknown 16.1
1899 Female, age 42, unknown 15.8
2724 Male, age 74, right hemisphere 15.6
2398 Male, age 61, left hemisphere 15.2
1932 Male, age 80, right hemisphere 8.4
Subthalamic nucleus
nTPM: 29.2
2406 Female, age 72, unknown 50.7
2779 Female, age 42, unknown 32.9
2124 Male, age 62, unknown 28.4
2275 Male, age 66, unknown 27.7
2216 Male, age 48, unknown 26.0
2056 Female, age 72, unknown 25.9
2658 Male, age 74, both hemispheres 21.5
2282 Male, age 61, both hemispheres 20.7
Ventral posterolateral thalamic nucleus
nTPM: 13.2
2740 Male, age 76, right hemisphere 29.6
2197 Male, age 80, both hemispheres 12.4
2581 Female, age 72, unknown 11.6
2578 Male, age 74, both hemispheres 11.2
2397 Male, age 61, right hemisphere 9.3
2570 Male, age 75, right hemisphere 5.0
Ventral posteromedial thalamic nucleus
nTPM: 15.3
2127 Male, age 76, right hemisphere 31.4
2202 Male, age 61, left hemisphere 14.9
2758 Male, age 80, both hemispheres 13.8
2653 Male, age 74, both hemispheres 9.9
2281 Male, age 75, right hemisphere 6.4
Ventral thalamic nuclei
nTPM: 14.3
2291 Female, age 72, unknown 20.3
1912 Female, age 42, unknown 17.1
2285 Male, age 62, unknown 16.4
2858 Female, age 72, unknown 15.9
1845 Male, age 48, unknown 14.2
2204 Male, age 80, both hemispheres 13.4
1860 Male, age 76, both hemispheres 13.2
2652 Male, age 74, left hemisphere 10.4
2580 Male, age 66, unknown 7.4
Zona incerta
nTPM: 22.4
2208 Male, age 80, right hemisphere 36.3
2403 Male, age 62, unknown 32.5
2663 Female, age 72, unknown 19.9
2822 Male, age 74, right hemisphere 13.0
2215 Male, age 66, unknown 10.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 23.9
FF:10154-103A1 76 years, female 23.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.9
Pig sample Sample description nTPM
Thalamus
nTPM: 36.9
Samples: 4

Max nTPM: 52.2
Min nTPM: 19.7
Sample A Female 37.5
Sample B Female 52.2
Sample C Male 38.3
Sample D Male 19.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 43.6
Samples: 4

Max nTPM: 51.1
Min nTPM: 37.9
Sample A Male 44.4
Sample B Male 37.9
Sample C Female 51.1
Sample D Female 40.8

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