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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:79.9 nTPM
HPA:61.0 nTPM
GTEx:79.9 nTPM
FANTOM5:144.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042720
Glandular cells Low

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.0
overview
Male, age 65
Small intestine sample 232
nTPM: 59.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 60.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 68.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 55.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 79.9
Samples: 187

Max nTPM: 270.3
Min nTPM: 36.0
Std nTPM: 33.2
Median nTPM: 73.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 270.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 211.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 204.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 170.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 162.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 160.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 158.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 157.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 149.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 138.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 137.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 136.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 126.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 126.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 126.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 125.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 125.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 122.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 122.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 120.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 120.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 119.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 117.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 117.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 114.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 110.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 106.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 105.4
GTEX-1192X-2526-SM-59868 50-59 years, male 105.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 105.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 104.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 104.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 102.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 102.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 100.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 99.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 98.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 96.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 96.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 95.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 95.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 95.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 94.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 93.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 92.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 92.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 91.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 91.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 90.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 89.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 88.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 88.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 88.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 86.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 86.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 85.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 85.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 85.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 84.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 84.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 83.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 83.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 83.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 83.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 83.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 83.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 82.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 81.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 81.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 80.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 80.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 79.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 79.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 78.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 78.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 77.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 77.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 77.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 77.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 76.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 76.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 76.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 76.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 76.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 75.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 75.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 75.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 74.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 74.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 74.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 74.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 74.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 73.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 73.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 73.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 72.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 72.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 72.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 71.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 71.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 70.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 70.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 70.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 70.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 70.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 70.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 69.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 68.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 67.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 67.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 67.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 67.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 67.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 66.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 66.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 66.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 66.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 66.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 65.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 65.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 64.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 63.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 63.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 63.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 63.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 63.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 61.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 61.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 61.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 59.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 59.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 59.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 59.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 58.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 58.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 58.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 56.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 56.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 56.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 56.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 56.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 56.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 56.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 55.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 55.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 54.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 54.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 54.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 54.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 54.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 54.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 54.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 53.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 53.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 53.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 52.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 52.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 52.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 52.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 52.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 51.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 51.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 51.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 50.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 50.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 50.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 50.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 49.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 49.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 49.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 48.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 48.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 48.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 46.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 45.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 45.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 45.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 44.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 43.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 43.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 43.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 41.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 41.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 39.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 39.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 36.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 36.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

144.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 144.3
FF:10024-101D6 15,40,85 years, mixed 144.3

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