MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:557.2 nTPM
HPA Brain:364.1 nTPM
GTEx:557.2 nTPM
FANTOM5:396.6 Scaled Tags Per Million
Pig:399.4 nTPM
Mouse:622.4 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 364.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 272.3
2586 Male, age 75, left hemisphere 331.3
1827 Male, age 72, unknown 295.0
2219 Male, age 76, both hemispheres 290.9
2828 Female, age 72, unknown 272.3
2666 Male, age 74, left hemisphere 268.1
2411 Female, age 72, unknown 264.9
1833 Male, age 53, unknown 263.6
2019 Male, age 18, unknown 258.7
1870 Female, age 42, unknown 254.0
1830 Male, age 51, unknown 224.0
Dorsal raphe nucleus
nTPM: 308.3
2298 Female, age 72, unknown 350.5
2047 Male, age 72, unknown 338.4
1828 Male, age 53, unknown 314.8
2750 Male, age 76, both hemispheres 284.9
2016 Female, age 72, unknown 252.9
Inferior colliculus
nTPM: 266.7
2097 Female, age 72, unknown 280.4
2849 Male, age 72, unknown 278.5
1890 Male, age 53, unknown 271.3
1848 Female, age 42, unknown 236.4
Median raphe nucleus
nTPM: 356.9
2220 Male, age 76, midline 356.9
Periaquaductal grey, anterior
nTPM: 304.7
1795 Male, age 51, unknown 325.3
1947 Male, age 18, unknown 316.5
2502 Female, age 75, unknown 272.2
Periaquaductal grey, dorsal
nTPM: 270.3
2850 Male, age 76, both hemispheres 326.7
1840 Male, age 53, unknown 272.2
1831 Male, age 72, unknown 259.6
2464 Female, age 72, unknown 222.8
Periaquaductal grey, lateral
nTPM: 264.7
2272 Male, age 74, both hemispheres 275.3
2140 Male, age 76, both hemispheres 259.7
2053 Male, age 18, unknown 259.0
Pretectal area
nTPM: 302.6
1816 Male, age 51, unknown 362.8
1817 Female, age 42, unknown 360.9
1944 Female, age 72, unknown 343.8
2007 Male, age 72, unknown 341.8
2667 Female, age 75, unknown 320.1
1815 Male, age 53, unknown 314.2
2224 Female, age 72, unknown 294.5
2825 Male, age 18, unknown 270.3
2273 Male, age 74, both hemispheres 267.7
2316 Male, age 76, right hemisphere 226.4
2407 Male, age 75, both hemispheres 225.9
Red nucleus
nTPM: 290.8
1821 Female, age 72, unknown 358.8
2725 Female, age 75, unknown 352.3
2503 Female, age 72, unknown 299.6
1954 Female, age 42, unknown 286.6
1904 Male, age 53, unknown 285.0
2769 Male, age 72, unknown 283.6
2227 Male, age 72, unknown 279.7
2785 Male, age 18, unknown 276.0
1865 Male, age 51, unknown 271.6
2588 Male, age 74, left hemisphere 269.2
2584 Male, age 75, left hemisphere 268.3
2823 Male, age 76, right hemisphere 258.6
Substantia nigra
nTPM: 364.1
1916 Female, age 42, unknown 514.7
1851 Male, age 51, unknown 424.8
2699 Male, age 18, unknown 397.1
2665 Male, age 74, both hemispheres 382.3
1889 Female, age 72, unknown 346.4
1941 Male, age 53, unknown 331.1
2409 Female, age 72, unknown 320.9
2241 Male, age 72, unknown 313.9
2583 Male, age 75, right hemisphere 308.1
2590 Female, age 75, unknown 301.6
Superior colliculus
nTPM: 263.5
1796 Male, age 53, unknown 319.5
2261 Male, age 18, unknown 282.2
2087 Female, age 72, unknown 273.8
2587 Male, age 74, left hemisphere 270.3
2668 Female, age 75, unknown 267.1
2664 Male, age 75, both hemispheres 253.5
1839 Male, age 51, unknown 249.2
1895 Male, age 76, right hemisphere 248.8
1913 Female, age 42, unknown 243.9
1995 Male, age 72, unknown 226.6
Ventral tegmental area
nTPM: 336.5
1915 Female, age 42, unknown 400.3
2218 Male, age 76, both hemispheres 373.3
2410 Female, age 72, unknown 370.7
2223 Female, age 72, unknown 304.7
1942 Male, age 51, unknown 293.7
2021 Male, age 53, unknown 276.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 557.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 557.2
Samples: 139

Max nTPM: 1050.9
Min nTPM: 247.1
Std nTPM: 150.1
Median nTPM: 555.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1050.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 932.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 907.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 907.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 880.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 865.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 861.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 840.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 820.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 794.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 741.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 396.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 396.6
FF:10158-103A5 76 years, female 396.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 399.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 337.0
Samples: 4

Max nTPM: 507.2
Min nTPM: 209.6
Sample A Female 507.2
Sample B Female 251.4
Sample C Male 379.9
Sample D Male 209.6
Midbrain
nTPM: 330.0
Samples: 4

Max nTPM: 385.9
Min nTPM: 292.3
Sample A Female 312.0
Sample B Female 292.3
Sample C Male 385.9
Sample D Male 329.8
Periaqueductal gray
nTPM: 242.1
Samples: 3

Max nTPM: 285.0
Min nTPM: 220.1
Sample B Female 221.2
Sample C Male 285.0
Sample D Male 220.1
Superior colliculi
nTPM: 399.4
Samples: 4

Max nTPM: 517.1
Min nTPM: 320.1
Sample A Female 517.1
Sample B Female 320.1
Sample C Male 436.3
Sample D Male 324.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 622.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 622.4
Samples: 4

Max nTPM: 698.7
Min nTPM: 538.8
Sample A Male 698.7
Sample B Male 588.4
Sample C Female 538.8
Sample D Female 663.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
69734572 Antisense, RP_050503_01_B10, Mouse strain C57BL/6J (56 days, male) 11.8

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