We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TUBA1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TUBA1A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:533.8 nTPM
FANTOM5:936.3 Scaled Tags Per Million
Pig:498.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB008686
Glial cells MediumNot detectedNot detectedNot detected
Neuronal cells HighHighLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

533.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 533.8
Samples: 246

Max nTPM: 1244.4
Min nTPM: 246.6
Std nTPM: 155.2
Median nTPM: 512.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1244.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1152.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1051.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 993.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 961.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 875.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 858.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 849.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 844.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 826.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 825.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 803.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 788.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 785.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 785.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 783.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 781.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 773.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 765.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 765.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 762.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 757.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 757.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 755.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 753.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 747.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 737.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 737.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 712.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 705.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 696.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 693.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 689.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 684.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 681.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 680.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 678.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 673.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 670.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 668.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 667.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 666.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 662.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 655.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 653.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 651.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 650.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 647.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 646.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 645.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 644.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 640.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 640.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 636.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 635.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 634.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 632.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 630.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 628.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 623.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 619.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 615.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 615.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 609.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 606.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 605.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 604.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 603.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 601.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 599.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 599.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 597.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 594.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 594.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 593.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 585.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 585.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 582.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 581.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 580.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 579.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 574.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 571.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 571.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 569.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 569.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 566.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 566.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 563.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 560.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 559.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 556.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 552.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 551.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 551.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 550.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 546.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 546.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 543.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 540.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 539.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 536.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 536.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 536.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 533.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 533.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 533.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 532.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 532.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 529.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 527.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 527.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 527.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 526.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 526.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 524.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 523.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 520.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 520.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 520.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 515.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 514.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 513.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 512.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 511.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 509.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 509.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 509.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 509.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 506.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 506.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 505.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 503.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 503.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 502.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 499.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 499.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 498.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 498.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 496.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 495.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 495.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 495.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 495.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 494.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 491.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 490.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 486.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 486.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 483.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 481.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 479.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 478.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 478.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 475.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 474.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 469.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 468.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 465.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 465.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 463.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 461.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 460.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 457.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 452.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 451.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 451.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 449.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 448.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 448.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 446.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 445.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 444.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 443.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 443.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 438.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 435.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 433.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 433.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 432.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 432.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 429.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 425.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 422.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 422.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 419.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 418.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 414.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 414.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 414.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 413.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 413.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 412.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 410.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 410.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 407.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 406.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 405.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 405.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 403.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 399.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 399.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 398.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 397.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 395.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 394.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 392.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 391.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 389.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 384.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 382.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 382.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 379.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 379.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 379.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 378.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 375.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 375.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 374.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 372.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 370.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 367.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 361.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 358.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 356.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 349.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 338.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 335.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 329.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 325.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 324.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 323.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 322.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 319.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 318.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 314.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 312.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 293.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 287.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 286.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 282.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 280.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 261.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 257.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 253.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 246.6
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

936.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 936.3
FF:10164-103B2 76 years, female 936.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

498.4
Pig sample Sample description nTPM
Caudate
nTPM: 498.4
Samples: 4

Max nTPM: 659.0
Min nTPM: 359.1
Sample A Female 412.2
Sample B Female 563.2
Sample C Male 659.0
Sample D Male 359.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org