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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:113.4 nTPM
GTEx:113.4 nTPM
FANTOM5:315.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB008686
Squamous epithelial cells MediumNot detectedNot detectedMedium






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 113.4
Samples: 156

Max nTPM: 444.3
Min nTPM: 18.6
Std nTPM: 80.0
Median nTPM: 89.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 444.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 401.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 364.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 357.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 343.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 305.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 304.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 304.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 297.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 288.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 267.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 263.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 252.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 232.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 224.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 223.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 211.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 211.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 209.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 201.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 195.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 185.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 185.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 179.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 177.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 172.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 171.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 169.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 160.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 155.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 155.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 147.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 146.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 146.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 145.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 145.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 144.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 144.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 142.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 140.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 140.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 136.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 134.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 126.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 124.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 123.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 122.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 122.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 122.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 121.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 119.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 118.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 117.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 117.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 116.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 116.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 112.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 112.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 111.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 108.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 108.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 107.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 106.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 104.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 102.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 102.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 101.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 100.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 100.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 99.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 99.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 96.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 96.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 96.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 96.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 95.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 92.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 89.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 88.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 86.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 84.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 83.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 82.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 82.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 82.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 81.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 81.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 79.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 79.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 78.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 77.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 77.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 75.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 75.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 75.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 72.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 71.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 70.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 68.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 68.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 68.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 68.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 68.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 68.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 67.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 67.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 66.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 64.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 63.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 63.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 62.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 62.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 62.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 61.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 61.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 61.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 60.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 60.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 59.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 58.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 57.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 57.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 56.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 54.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 53.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 53.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 52.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 51.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 51.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 50.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 49.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 49.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 49.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 47.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 47.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 47.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 46.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 44.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 43.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 42.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 42.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 42.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 41.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 41.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 41.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 37.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 35.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 35.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 34.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 34.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 31.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 28.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 27.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 25.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 19.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 18.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

315.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 315.6
FF:10204-103F6 68 years, female 315.6

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