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  • TUBA1A
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2404.7 nTPM
HPA Brain:1213.1 nTPM
GTEx:2404.7 nTPM
FANTOM5:2549.3 Scaled Tags Per Million
Pig:2536.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1213.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 969.8
1981 Female, age 72, midline 1427.4
2048 Male, age 55, midline 990.9
2816 Male, age 47, midline 914.8
2194 Female, age 79, both hemispheres 820.4
2565 Male, age 75, midline 695.7
Cervical spinal cord, dorsal horn
nTPM: 1213.1
2296 Male, age 66, both hemispheres 2022.4
2173 Female, age 72, unknown 1817.6
2069 Male, age 47, both hemispheres 1336.6
1877 Male, age 55, unknown 892.4
2721 Male, age 90, both hemispheres 654.1
2297 Male, age 75, both hemispheres 555.4
Cervical spinal cord, ventral horn
nTPM: 1054.2
2098 Female, age 72, unknown 1731.8
2480 Male, age 75, both hemispheres 1077.5
2068 Male, age 55, unknown 1052.9
2809 Male, age 90, both hemispheres 921.9
2295 Male, age 66, both hemispheres 819.2
2820 Female, age 79, both hemispheres 722.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2404.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2404.7
Samples: 159

Max nTPM: 5033.4
Min nTPM: 636.0
Std nTPM: 948.3
Median nTPM: 2315.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 5033.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 4922.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4769.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 4754.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4729.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4641.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4537.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4457.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 4276.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 4024.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3941.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3815.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3757.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3733.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3717.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3683.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3674.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3609.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3580.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3559.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3552.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3483.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3412.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3383.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3382.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3364.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3310.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3235.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3220.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3211.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 3185.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3181.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3154.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3152.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3136.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3128.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3063.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3059.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3029.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3021.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2951.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2897.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2870.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2849.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2829.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2808.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2807.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2805.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2785.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2783.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2773.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2745.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2739.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2728.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2708.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2650.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2636.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2633.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2583.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2562.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2537.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2506.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2485.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2448.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2446.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2443.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2440.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2422.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2414.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2403.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2373.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2351.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2348.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2344.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2341.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2334.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2322.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2322.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2316.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2315.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2312.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2283.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2277.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2262.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2257.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2254.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2222.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2217.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2205.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2203.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2200.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2178.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2171.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2147.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2147.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2146.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2130.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2129.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2069.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2060.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2037.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1991.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1981.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1980.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1974.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1968.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1944.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1932.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1893.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1872.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1861.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1822.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1816.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1793.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1765.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1753.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1747.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1740.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1736.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1711.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1698.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1657.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1656.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1637.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1637.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1623.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1598.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1568.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1558.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1525.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1523.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1499.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1462.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1441.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1414.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1406.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1402.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1393.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1368.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1351.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1328.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1315.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1311.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1309.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1306.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1299.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1275.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1158.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1100.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 990.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 937.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 932.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 921.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 899.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 800.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 771.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 766.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 693.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 636.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2549.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2549.3
FF:10181-103D1 60 years, female 3077.9
FF:10159-103A6 76 years, female 2020.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2536.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1722.9
Samples: 4

Max nTPM: 1983.4
Min nTPM: 1479.3
Sample A Female 1479.3
Sample B Female 1828.0
Sample C Male 1983.4
Sample D Male 1600.9
Ventral spinal cord
nTPM: 2537.0
Samples: 4

Max nTPM: 2806.0
Min nTPM: 2283.2
Sample A Female 2407.7
Sample B Female 2650.9
Sample C Male 2806.0
Sample D Male 2283.2

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