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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 68.9
2301
Female, age 85, both hemispheres
75.3
1984
Male, age 76, both hemispheres
72.4
2188
Female, age 91, both hemispheres
68.0
2090
Male, age 80, both hemispheres
60.0
Dorsal cochlear nucleus nTPM: 73.2
2802
Male, age 74, right hemisphere
86.9
2058
Male, age 76, both hemispheres
77.4
2187
Female, age 91, both hemispheres
76.2
2370
Male, age 61, both hemispheres
69.7
2378
Male, age 80, both hemispheres
56.0
Dorsal tegmental nucleus nTPM: 72.2
2083
Male, age 80, both hemispheres
80.5
2358
Male, age 61, both hemispheres
74.9
1936
Male, age 76, left hemisphere
68.3
2326
Male, age 74, both hemispheres
65.0
Dorsolateral tegmental area nTPM: 68.9
2654
Male, age 80, both hemispheres
76.9
2141
Male, age 76, both hemispheres
74.6
2751
Female, age 85, both hemispheres
72.1
2360
Male, age 74, both hemispheres
61.7
2337
Male, age 61, both hemispheres
59.4
Kolliker-Fuse nucleus nTPM: 76.6
2793
Female, age 91, left hemisphere
85.5
2163
Male, age 80, both hemispheres
84.1
2315
Male, age 76, right hemisphere
60.2
Lateral lemniscal nuclei nTPM: 100.6
2169
Male, age 76, both hemispheres
117.2
2036
Male, age 80, both hemispheres
108.6
2453
Male, age 74, right hemisphere
105.0
2746
Female, age 85, left hemisphere
89.4
2320
Female, age 91, left hemisphere
82.6
Lateral parabrachial nucleus nTPM: 78.5
2139
Female, age 85, right hemisphere
104.2
2790
Male, age 61, both hemispheres
82.1
2013
Male, age 80, both hemispheres
73.6
2792
Male, age 76, both hemispheres
54.0
Lateral vestibular nucleus nTPM: 81.3
2184
Male, age 76, both hemispheres
86.3
2311
Male, age 80, both hemispheres
76.2
Locus coeruleus nTPM: 91.4
2123
Female, age 91, both hemispheres
108.7
2720
Male, age 74, both hemispheres
103.0
2014
Male, age 55, unknown
98.9
2317
Female, age 72, unknown
92.3
1980
Male, age 76, both hemispheres
84.7
2162
Male, age 80, both hemispheres
81.3
2788
Male, age 74, unknown
70.8
Medial parabrachial nucleus nTPM: 79.0
2854
Male, age 80, both hemispheres
87.4
2156
Male, age 61, both hemispheres
84.7
2170
Female, age 91, both hemispheres
82.6
2786
Male, age 76, both hemispheres
72.7
2463
Female, age 85, right hemisphere
67.6
Medial periolivary nuclei nTPM: 93.4
2063
Male, age 76, both hemispheres
123.7
2171
Female, age 85, both hemispheres
119.0
2791
Male, age 74, right hemisphere
90.8
2458
Female, age 91, both hemispheres
69.8
2081
Male, age 80, both hemispheres
63.7
Motor facial nucleus nTPM: 95.2
2062
Male, age 76, both hemispheres
129.9
2365
Male, age 74, right hemisphere
98.5
2697
Female, age 85, both hemispheres
90.9
2795
Female, age 91, both hemispheres
89.3
2327
Male, age 80, both hemispheres
88.5
2126
Male, age 61, both hemispheres
74.4
Motor trigeminal nucleus nTPM: 80.8
2560
Male, age 74, both hemispheres
94.2
2079
Male, age 80, both hemispheres
88.8
2335
Male, age 61, both hemispheres
79.8
2309
Male, age 76, both hemispheres
71.9
2321
Female, age 91, both hemispheres
69.1
Nuclei of the trapezoid body nTPM: 107.1
2159
Male, age 61, both hemispheres
129.6
1983
Male, age 76, both hemispheres
127.7
2735
Female, age 85, both hemispheres
118.3
2166
Male, age 80, both hemispheres
83.9
2368
Female, age 91, both hemispheres
76.0
Nucleus raphe magnus nTPM: 104.7
2160
Male, age 61, both hemispheres
135.4
2172
Female, age 85, both hemispheres
125.8
2455
Male, age 74, both hemispheres
102.7
2051
Male, age 76, both hemispheres
101.0
2328
Male, age 80, both hemispheres
88.2
2459
Female, age 91, both hemispheres
75.2
Paramedian reticular nucleus nTPM: 85.2
2050
Female, age 85, both hemispheres
105.5
2313
Male, age 61, both hemispheres
96.8
2057
Male, age 80, both hemispheres
84.5
2052
Male, age 76, both hemispheres
53.9
Pedunculopontine tegmental nucleus nTPM: 72.6
1921
Female, age 85, both hemispheres
78.4
2334
Male, age 80, both hemispheres
76.7
2338
Male, age 61, both hemispheres
62.9
Pontine nuclei nTPM: 107.3
2787
Female, age 85, both hemispheres
139.6
1863
Male, age 55, unknown
138.5
1968
Male, age 76, left hemisphere
116.2
2727
Male, age 61, right hemisphere
116.2
2109
Female, age 72, unknown
115.8
2454
Male, age 74, left hemisphere
88.6
2115
Male, age 80, left hemisphere
74.1
2319
Female, age 91, both hemispheres
69.8
Pontine raphe nucleus nTPM: 93.1
2122
Female, age 85, midline
103.9
2853
Male, age 76, midline
82.3
Posteroventral cochlear nucleus nTPM: 67.5
2752
Female, age 85, both hemispheres
93.2
2070
Male, age 76, both hemispheres
77.0
2371
Male, age 61, both hemispheres
63.1
2135
Female, age 91, both hemispheres
52.9
2341
Male, age 80, both hemispheres
51.3
Principal sensory trigeminal nucleus nTPM: 90.9
2158
Male, age 61, both hemispheres
115.4
2008
Male, age 80, left hemisphere
90.8
2324
Male, age 76, both hemispheres
83.3
2367
Female, age 91, left hemisphere
74.3
Reticular pontine nucleus, caudal nTPM: 85.5
2332
Male, age 80, right hemisphere
103.2
2092
Male, age 76, both hemispheres
96.3
2559
Male, age 74, both hemispheres
75.6
2457
Female, age 91, both hemispheres
67.2
Reticular pontine nucleus, oral nTPM: 81.8
2361
Male, age 74, both hemispheres
98.2
2012
Female, age 85, both hemispheres
90.6
2167
Male, age 76, both hemispheres
76.3
1939
Male, age 80, both hemispheres
75.1
2366
Female, age 91, both hemispheres
69.1
Reticulotegmental nucleus nTPM: 84.0
2325
Male, age 76, both hemispheres
97.8
2452
Male, age 74, both hemispheres
88.0
2322
Female, age 91, both hemispheres
75.5
2333
Male, age 80, both hemispheres
74.7
Spinal trigeminal nucleus, oral nTPM: 82.4
2737
Female, age 85, both hemispheres
86.0
1978
Male, age 76, both hemispheres
82.2
2164
Male, age 80, both hemispheres
79.0
Subcoeruleus area nTPM: 82.1
2323
Female, age 91, left hemisphere
92.2
2089
Male, age 76, left hemisphere
90.8
1958
Male, age 80, both hemispheres
85.7
2451
Male, age 74, both hemispheres
77.5
2369
Female, age 85, left hemisphere
64.3
Superior olive nTPM: 90.0
1875
Female, age 85, both hemispheres
108.8
2020
Male, age 76, both hemispheres
90.9
2329
Male, age 80, right hemisphere
87.7
2364
Male, age 74, right hemisphere
85.0
2561
Female, age 91, both hemispheres
77.6
Ventral periolivary nuclei nTPM: 95.8
2130
Female, age 85, both hemispheres
114.9
2165
Male, age 80, both hemispheres
99.9
2023
Male, age 76, both hemispheres
91.9
2794
Female, age 91, left hemisphere
76.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 85.5
2449
Male, age 74, both hemispheres
102.5
1959
Male, age 76, both hemispheres
99.7
2840
Female, age 85, both hemispheres
89.4
2161
Male, age 80, both hemispheres
83.0
2456
Female, age 91, both hemispheres
70.2
2359
Male, age 61, both hemispheres
68.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.8
Pig sample
Sample description
nTPM
Pons nTPM: 80.8
Samples: 4
Max nTPM: 113.0
Min nTPM: 60.2
Sample A
Female
113.0
Sample B
Female
60.2
Sample C
Male
71.0
Sample D
Male
79.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
