We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PRDX2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PRDX2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:336.4 nTPM
HPA Brain:287.1 nTPM
GTEx:336.4 nTPM
FANTOM5:192.0 Scaled Tags Per Million
Pig:240.4 nTPM
Mouse:334.5 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.1
Sample id Sample description nTPM
Amygdala
nTPM: 287.1
2814 Male, age 76, right hemisphere 394.2
1987 Female, age 91, left hemisphere 283.5
2514 Male, age 75, right hemisphere 275.4
2695 Female, age 67, right hemisphere 253.6
2517 Female, age 94, left hemisphere 228.5
Basal amygdala
nTPM: 240.4
2243 Female, age 91, right hemisphere 301.7
2609 Male, age 75, right hemisphere 287.5
2110 Male, age 80, left hemisphere 256.2
1955 Male, age 76, both hemispheres 253.5
2685 Female, age 94, left hemisphere 214.9
2827 Female, age 67, right hemisphere 128.8
Central amygdala
nTPM: 276.4
1905 Male, age 76, both hemispheres 357.5
2515 Male, age 75, right hemisphere 291.2
2239 Male, age 80, left hemisphere 250.9
2701 Female, age 91, right hemisphere 243.5
2826 Female, age 94, left hemisphere 239.1
Corticomedial amygdala
nTPM: 250.7
2242 Female, age 91, right hemisphere 292.8
2829 Male, age 80, left hemisphere 282.9
2428 Male, age 75, right hemisphere 269.7
2429 Female, age 94, left hemisphere 246.1
2240 Male, age 76, both hemispheres 245.7
2535 Female, age 67, right hemisphere 167.0
Lateral amygdala
nTPM: 234.2
1883 Male, age 76, both hemispheres 337.5
2516 Male, age 75, right hemisphere 278.1
2534 Female, age 94, left hemisphere 247.1
2255 Female, age 91, right hemisphere 240.8
2256 Male, age 80, left hemisphere 182.2
2830 Female, age 67, right hemisphere 119.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 336.4
Samples: 152

Max nTPM: 845.8
Min nTPM: 63.1
Std nTPM: 106.1
Median nTPM: 329.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 845.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 762.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 649.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 633.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 596.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 557.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 521.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 507.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 500.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 493.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 481.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 472.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 469.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 465.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 459.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 456.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 447.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 440.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 439.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 435.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 435.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 424.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 419.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 417.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 410.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 409.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 408.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 408.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 406.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 400.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 400.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 397.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 396.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 392.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 390.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 389.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 382.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 382.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 374.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 372.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 371.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 369.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 368.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 368.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 368.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 365.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 363.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 361.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 360.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 357.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 357.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 355.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 354.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 353.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 351.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 350.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 350.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 349.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 347.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 347.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 346.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 343.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 341.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 341.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 341.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 341.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 340.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 339.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 338.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 336.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 336.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 334.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 334.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 332.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 331.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 330.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 327.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 327.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 322.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 321.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 321.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 319.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 317.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 317.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 317.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 316.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 314.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 312.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 311.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 311.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 310.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 310.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 309.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 303.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 301.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 299.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 295.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 294.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 293.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 293.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 292.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 291.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 290.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 288.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 286.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 283.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 283.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 282.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 281.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 281.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 280.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 278.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 271.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 271.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 270.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 269.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 267.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 263.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 263.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 258.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 255.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 254.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 252.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 251.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 250.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 244.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 241.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 238.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 235.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 230.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 229.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 228.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 226.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 216.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 215.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 214.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 213.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 211.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 211.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 208.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 201.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 200.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 199.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 197.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 194.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 192.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 178.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 177.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 165.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 63.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 192.0
FF:10151-102I7 76 years, female 192.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.4
Pig sample Sample description nTPM
Amygdala
nTPM: 240.4
Samples: 4

Max nTPM: 357.6
Min nTPM: 189.4
Sample A Female 357.6
Sample B Female 189.4
Sample C Male 214.8
Sample D Male 199.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

334.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 334.5
Samples: 4

Max nTPM: 352.5
Min nTPM: 318.7
Sample A Male 339.6
Sample B Male 352.5
Sample C Female 318.7
Sample D Female 327.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
75233570 Antisense, RP_051121_03_C01, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org