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SLC3A2
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  • SLC3A2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:129.3 nTPM
FANTOM5:104.3 Scaled Tags Per Million
Pig:82.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA017980Antibody CAB010455
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 129.3
Samples: 246

Max nTPM: 879.6
Min nTPM: 37.7
Std nTPM: 71.8
Median nTPM: 113.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 879.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 400.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 346.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 302.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 295.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 294.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 287.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 266.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 252.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 251.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 243.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 241.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 231.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 229.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 225.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 224.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 219.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 219.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 215.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 210.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 208.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 206.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 205.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 203.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 202.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 201.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 197.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 195.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 186.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 180.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 179.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 178.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 177.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 176.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 176.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 175.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 173.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 170.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 170.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 169.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 166.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 164.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 163.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 162.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 161.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 160.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 159.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 159.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 159.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 159.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 159.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 158.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 158.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 157.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 153.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 153.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 152.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 151.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 151.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 150.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 149.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 149.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 147.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 147.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 146.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 144.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 142.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 142.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 141.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 141.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 141.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 141.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 140.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 139.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 138.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 138.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 137.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 136.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 136.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 135.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 135.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 134.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 133.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 133.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 131.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 131.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 131.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 130.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 130.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 129.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 129.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 128.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 128.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 128.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 127.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 126.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 125.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 125.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 124.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 124.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 124.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 123.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 122.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 121.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 121.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 121.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 117.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 117.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 116.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 116.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 116.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 116.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 116.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 115.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 114.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 113.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 113.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 113.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 112.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 112.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 112.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 111.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 111.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 111.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 111.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 110.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 109.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 109.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 109.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 108.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 105.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 105.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 105.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 104.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 104.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 104.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 104.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 104.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 103.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 103.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 103.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 103.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 102.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 102.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 101.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 101.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 100.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 99.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 99.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 99.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 97.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 97.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 96.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 96.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 94.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 94.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 94.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 94.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 93.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 92.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 92.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 91.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 91.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 91.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 90.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 90.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 90.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 90.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 90.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 89.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 89.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 89.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 88.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 88.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 88.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 88.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 88.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 87.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 87.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 87.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 86.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 86.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 85.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 85.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 84.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 84.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 83.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 83.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 81.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 81.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 80.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 80.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 79.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 79.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 77.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 77.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 76.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 76.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 76.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 76.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 76.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 75.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 75.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 75.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 75.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 73.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 72.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 71.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 70.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 69.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 69.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 67.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 64.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 62.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 62.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 61.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 59.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 57.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 56.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 46.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 39.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 37.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

104.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.3
FF:10164-103B2 76 years, female 104.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.8
Pig sample Sample description nTPM
Caudate
nTPM: 82.9
Samples: 4

Max nTPM: 104.4
Min nTPM: 65.3
Sample A Female 65.3
Sample B Female 87.8
Sample C Male 104.4
Sample D Male 73.9

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