We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPSA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPSA
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1017.2 nTPM
HPA Brain:329.7 nTPM
GTEx:1017.2 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Mouse:322.4 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.7
Sample id Sample description nTPM
Amygdala
nTPM: 297.3
2695 Female, age 67, right hemisphere 389.3
2514 Male, age 75, right hemisphere 305.3
2517 Female, age 94, left hemisphere 291.2
1987 Female, age 91, left hemisphere 271.3
2814 Male, age 76, right hemisphere 229.1
Basal amygdala
nTPM: 274.9
2827 Female, age 67, right hemisphere 405.3
2609 Male, age 75, right hemisphere 315.3
2685 Female, age 94, left hemisphere 276.9
2110 Male, age 80, left hemisphere 263.8
2243 Female, age 91, right hemisphere 209.1
1955 Male, age 76, both hemispheres 179.1
Central amygdala
nTPM: 319.9
2826 Female, age 94, left hemisphere 546.2
2515 Male, age 75, right hemisphere 388.9
2239 Male, age 80, left hemisphere 241.8
2701 Female, age 91, right hemisphere 226.3
1905 Male, age 76, both hemispheres 196.2
Corticomedial amygdala
nTPM: 240.9
2428 Male, age 75, right hemisphere 324.1
2535 Female, age 67, right hemisphere 275.5
2829 Male, age 80, left hemisphere 251.7
2242 Female, age 91, right hemisphere 227.5
2429 Female, age 94, left hemisphere 200.9
2240 Male, age 76, both hemispheres 165.8
Lateral amygdala
nTPM: 329.7
2830 Female, age 67, right hemisphere 502.9
2516 Male, age 75, right hemisphere 372.1
2534 Female, age 94, left hemisphere 367.0
2256 Male, age 80, left hemisphere 284.4
2255 Female, age 91, right hemisphere 237.1
1883 Male, age 76, both hemispheres 214.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1017.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1017.2
Samples: 152

Max nTPM: 2546.2
Min nTPM: 435.5
Std nTPM: 354.5
Median nTPM: 935.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2546.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2050.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1993.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1970.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1946.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1837.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1828.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1739.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1736.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1704.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1697.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1574.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1566.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1558.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1553.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1516.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1485.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1440.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1438.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1421.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1410.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1380.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1369.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1369.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1321.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1302.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1287.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1282.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1272.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1271.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1270.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1261.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1243.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1239.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1237.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1219.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1205.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1199.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1172.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1163.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1151.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1124.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1109.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1090.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1075.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1073.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1070.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1061.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1052.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1042.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1039.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1038.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1037.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1036.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1034.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1031.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1029.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1022.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1021.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1017.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1013.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1000.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 994.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 994.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 985.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 976.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 971.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 970.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 960.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 959.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 956.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 951.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 943.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 943.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 943.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 941.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 930.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 929.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 928.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 924.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 923.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 918.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 915.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 908.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 908.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 904.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 890.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 887.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 874.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 873.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 870.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 865.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 865.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 863.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 863.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 861.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 860.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 855.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 853.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 847.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 840.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 826.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 821.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 814.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 813.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 813.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 812.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 808.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 804.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 785.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 780.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 766.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 762.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 760.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 759.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 755.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 754.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 740.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 738.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 735.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 734.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 734.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 727.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 722.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 717.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 715.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 712.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 712.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 709.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 708.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 702.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 697.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 689.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 681.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 677.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 676.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 672.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 661.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 660.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 648.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 642.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 642.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 638.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 613.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 612.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 594.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 589.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 576.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 538.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 511.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 494.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 435.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.7
FF:10151-102I7 76 years, female 61.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 322.4
Samples: 4

Max nTPM: 352.2
Min nTPM: 290.2
Sample A Male 290.2
Sample B Male 325.3
Sample C Female 352.2
Sample D Female 321.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
77620255 Antisense, RP_070129_04_C07, Mouse strain C57BL/6J (56 days, male) 26.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org