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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1029.6 nTPM
HPA Brain:408.3 nTPM
GTEx:1029.6 nTPM
FANTOM5:84.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 307.8
2565 Male, age 75, midline 368.7
1981 Female, age 72, midline 346.3
2816 Male, age 47, midline 280.4
2048 Male, age 55, midline 280.1
2194 Female, age 79, both hemispheres 263.3
Cervical spinal cord, dorsal horn
nTPM: 289.9
2173 Female, age 72, unknown 392.7
2296 Male, age 66, both hemispheres 334.3
2069 Male, age 47, both hemispheres 313.1
1877 Male, age 55, unknown 294.7
2297 Male, age 75, both hemispheres 213.7
2721 Male, age 90, both hemispheres 191.0
Cervical spinal cord, ventral horn
nTPM: 408.3
2480 Male, age 75, both hemispheres 619.7
2809 Male, age 90, both hemispheres 471.3
2098 Female, age 72, unknown 399.6
2068 Male, age 55, unknown 361.6
2295 Male, age 66, both hemispheres 356.5
2820 Female, age 79, both hemispheres 241.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1029.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1029.6
Samples: 159

Max nTPM: 2141.3
Min nTPM: 387.5
Std nTPM: 330.6
Median nTPM: 973.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2141.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2060.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1904.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1868.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1774.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1773.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1758.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1754.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1623.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1585.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1581.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1580.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1563.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1498.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1469.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1459.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1459.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1453.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1441.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1427.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1418.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1412.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1402.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1366.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1358.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1357.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1334.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1327.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1314.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1314.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1283.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1278.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1268.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1268.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1248.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1228.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1218.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1212.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1207.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1203.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1199.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1193.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1182.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1178.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1168.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1159.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1156.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1149.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1140.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1138.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1130.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1125.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1122.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1118.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1107.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1092.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1089.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1081.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1071.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1067.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1066.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1064.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1060.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1055.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1053.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1047.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1044.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1042.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1037.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1032.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1032.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1031.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1025.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1023.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1022.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1020.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1019.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1010.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1002.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 973.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 970.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 965.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 965.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 958.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 944.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 943.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 934.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 926.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 922.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 920.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 919.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 917.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 915.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 913.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 907.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 907.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 903.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 893.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 889.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 888.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 885.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 882.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 882.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 877.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 875.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 875.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 867.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 864.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 864.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 853.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 852.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 851.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 848.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 845.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 837.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 835.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 835.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 817.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 812.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 811.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 802.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 799.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 787.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 778.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 763.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 757.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 748.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 747.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 747.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 741.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 735.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 732.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 722.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 717.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 709.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 708.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 708.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 704.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 700.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 699.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 686.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 679.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 679.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 672.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 663.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 639.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 630.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 615.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 597.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 574.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 543.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 532.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 528.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 509.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 501.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 456.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 447.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 428.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 387.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.4
FF:10181-103D1 60 years, female 92.8
FF:10159-103A6 76 years, female 76.1

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