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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:233.6 nTPM
HPA:190.1 nTPM
GTEx:233.6 nTPM
FANTOM5:329.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042582
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.1
overview
Male, age 65
Small intestine sample 232
nTPM: 170.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 196.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 180.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 213.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 233.6
Samples: 187

Max nTPM: 727.6
Min nTPM: 109.9
Std nTPM: 92.7
Median nTPM: 206.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 727.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 521.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 504.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 491.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 452.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 451.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 446.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 442.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 436.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 436.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 425.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 407.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 400.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 396.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 395.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 393.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 382.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 372.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 362.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 360.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 351.0
GTEX-1192X-2526-SM-59868 50-59 years, male 349.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 348.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 335.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 329.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 328.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 325.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 324.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 319.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 312.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 310.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 302.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 297.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 292.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 291.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 286.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 283.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 281.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 279.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 279.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 278.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 278.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 275.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 274.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 273.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 272.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 271.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 267.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 266.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 266.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 264.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 263.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 263.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 263.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 263.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 262.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 262.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 260.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 254.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 253.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 251.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 250.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 248.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 247.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 239.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 238.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 238.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 237.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 236.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 234.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 233.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 231.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 230.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 230.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 230.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 227.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 227.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 225.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 224.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 224.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 223.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 223.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 222.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 220.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 218.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 217.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 216.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 215.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 215.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 215.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 213.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 209.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 207.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 206.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 205.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 205.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 205.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 202.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 201.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 200.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 200.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 200.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 200.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 198.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 198.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 198.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 198.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 197.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 195.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 195.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 195.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 194.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 194.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 192.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 192.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 192.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 191.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 189.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 187.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 187.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 187.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 185.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 184.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 183.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 183.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 183.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 183.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 183.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 182.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 182.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 181.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 180.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 178.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 178.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 176.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 175.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 174.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 174.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 174.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 173.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 172.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 171.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 170.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 168.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 168.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 164.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 164.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 162.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 161.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 160.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 159.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 158.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 156.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 156.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 154.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 154.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 154.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 152.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 152.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 152.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 149.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 148.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 146.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 146.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 145.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 144.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 144.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 143.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 142.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 140.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 139.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 139.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 137.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 137.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 135.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 133.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 133.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 131.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 129.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 128.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 128.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 126.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 123.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 121.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 120.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 114.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 109.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

329.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 329.3
FF:10024-101D6 15,40,85 years, mixed 329.3

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