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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:265.3 nTPM
GTEx:265.3 nTPM
FANTOM5:293.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042582
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 265.3
Samples: 156

Max nTPM: 760.0
Min nTPM: 132.4
Std nTPM: 77.3
Median nTPM: 251.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 760.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 421.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 418.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 416.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 414.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 413.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 413.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 401.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 400.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 393.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 388.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 385.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 383.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 376.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 368.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 367.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 356.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 351.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 349.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 342.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 339.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 338.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 337.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 336.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 335.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 332.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 332.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 332.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 330.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 327.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 326.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 325.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 323.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 317.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 317.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 317.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 316.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 310.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 310.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 309.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 305.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 301.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 300.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 299.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 296.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 295.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 295.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 294.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 293.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 284.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 283.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 282.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 282.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 281.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 279.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 274.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 274.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 273.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 273.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 272.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 271.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 269.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 268.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 268.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 267.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 262.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 262.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 261.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 261.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 260.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 260.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 259.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 258.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 257.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 255.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 255.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 254.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 252.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 250.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 250.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 249.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 247.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 245.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 245.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 245.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 244.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 244.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 242.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 240.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 240.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 239.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 239.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 237.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 236.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 235.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 234.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 231.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 229.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 227.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 227.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 227.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 226.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 225.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 225.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 225.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 223.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 221.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 220.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 217.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 217.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 216.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 216.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 215.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 214.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 214.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 213.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 212.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 211.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 211.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 210.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 208.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 207.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 207.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 206.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 206.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 205.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 205.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 204.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 203.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 201.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 196.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 195.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 193.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 192.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 192.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 191.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 190.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 189.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 189.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 189.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 184.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 181.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 179.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 179.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 178.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 175.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 173.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 169.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 168.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 165.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 165.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 163.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 158.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 152.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 145.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 132.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

293.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 293.5
FF:10204-103F6 68 years, female 293.5

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