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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.3 nTPM
GTEx:241.3 nTPM
FANTOM5:222.8 Scaled Tags Per Million
Pig:119.8 nTPM
Mouse:128.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 241.3
Samples: 105

Max nTPM: 663.6
Min nTPM: 93.6
Std nTPM: 115.1
Median nTPM:
491_1 89 years, female 663.6
308_1 70 years, female 623.5
311_1 78 years, male 583.3
139_1 64 years, female 523.8
322_1 76 years, male 510.4
317_1 60 years, male 489.6
495_1 57 years, female 453.0
109_1 81 years, female 420.7
315_1 62 years, female 420.0
117_1 61 years, male 417.6
41_1 94 years, female 412.3
6_1 73 years, female 400.1
119_1 70 years, female 396.9
137_1 83 years, male 353.0
162_1 79 years, female 352.2
350_1 84 years, female 346.6
43_1 64 years, female 342.4
447_1 81 years, male 333.1
142_1 61 years, female 330.3
218_1 71 years, female 323.2
490_1 67 years, female 323.2
288_1 66 years, female 310.7
4_1 88 years, female 307.2
394_1 75 years, female 301.1
17_1 71 years, male 300.8
145_1 84 years, male 294.6
379_1 60 years, male 294.1
313_1 79 years, female 292.8
354_1 81 years, female 292.3
348_1 84 years, male 291.1
396_1 62 years, male 290.8
335_1 73 years, female 281.1
173_1 67 years, male 269.7
307_1 66 years, female 266.6
415_1 77 years, female 264.1
389_1 86 years, female 260.5
120_1 70 years, female 255.3
349_1 83 years, male 249.7
35_1 74 years, female 248.6
452_1 88 years, female 247.1
501_1 88 years, male 243.2
324_1 76 years, male 231.4
89_1 63 years, male 230.7
99_1 64 years, male 216.5
266_1 85 years, male 215.1
189_1 76 years, male 210.2
351_1 91 years, male 206.5
18_1 88 years, male 206.3
32_1 67 years, male 204.2
2_1 77 years, female 203.7
293_1 68 years, female 203.7
353_1 82 years, female 203.0
386_1 76 years, male 201.6
413_1 59 years, female 196.4
149_1 88 years, male 195.5
314_1 67 years, male 194.0
347_1 72 years, male 194.0
291_1 76 years, male 193.6
466_1 57 years, female 189.1
414_1 84 years, female 187.9
265_1 87 years, male 186.0
115_1 83 years, male 185.5
320_1 89 years, female 184.1
316_1 62 years, male 182.4
254_1 77 years, female 182.2
126_1 63 years, male 178.7
9_1 66 years, female 178.6
286_1 68 years, female 178.2
499_1 55 years, female 178.1
384_1 83 years, male 176.7
404_1 82 years, female 175.1
406_1 79 years, male 172.4
217_1 76 years, male 171.6
264_1 73 years, female 168.2
42_1 85 years, male 167.7
375_1 74 years, female 166.5
243_1 75 years, male 166.2
321_1 62 years, female 166.0
229_1 69 years, female 164.1
319_1 81 years, male 160.9
376_1 75 years, female 159.9
518_1 75 years, female 156.6
81_1 67 years, male 155.4
526_1 61 years, male 154.3
237_1 82 years, male 150.7
318_1 68 years, male 149.1
506_1 65 years, male 148.0
468_1 89 years, male 146.0
295_1 61 years, female 145.7
177_1 74 years, male 142.1
517_1 88 years, male 140.5
246_1 77 years, male 139.6
251_1 78 years, male 135.5
153_1 70 years, female 135.4
480_1 63 years, male 135.4
405_1 91 years, male 132.1
352_1 62 years, male 130.4
356_1 87 years, female 130.3
503_1 68 years, male 126.3
172_1 72 years, female 121.7
292_1 71 years, male 120.4
425_1 59 years, female 116.9
355_1 70 years, female 116.7
377_1 82 years, female 105.8
163_1 78 years, male 93.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 222.8
FF:10030-101E3 24-65 years, mixed 222.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.8
Pig sample Sample description nTPM
Retina
nTPM: 119.8
Samples: 4

Max nTPM: 131.1
Min nTPM: 105.6
Sample A Female 113.4
Sample B Female 105.6
Sample C Male 129.0
Sample D Male 131.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.0
Mouse sample Sample description nTPM
Retina
nTPM: 128.0
Samples: 4

Max nTPM: 155.5
Min nTPM: 109.9
Sample A Male 109.9
Sample B Male 155.5
Sample C Female 114.5
Sample D Female 132.1

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