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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:530.5 nTPM
HPA Brain:293.6 nTPM
GTEx:530.5 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Pig:109.5 nTPM
Mouse:76.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.6
Sample id Sample description nTPM
Amygdala
nTPM: 291.0
2695 Female, age 67, right hemisphere 482.0
2814 Male, age 76, right hemisphere 268.7
2514 Male, age 75, right hemisphere 263.2
2517 Female, age 94, left hemisphere 221.3
1987 Female, age 91, left hemisphere 219.8
Basal amygdala
nTPM: 270.5
2609 Male, age 75, right hemisphere 500.9
2243 Female, age 91, right hemisphere 284.3
2827 Female, age 67, right hemisphere 234.2
2110 Male, age 80, left hemisphere 226.5
2685 Female, age 94, left hemisphere 195.2
1955 Male, age 76, both hemispheres 182.2
Central amygdala
nTPM: 293.6
2515 Male, age 75, right hemisphere 362.5
2826 Female, age 94, left hemisphere 289.0
1905 Male, age 76, both hemispheres 274.1
2239 Male, age 80, left hemisphere 273.5
2701 Female, age 91, right hemisphere 268.9
Corticomedial amygdala
nTPM: 235.0
2829 Male, age 80, left hemisphere 321.6
2428 Male, age 75, right hemisphere 316.2
2242 Female, age 91, right hemisphere 233.4
2535 Female, age 67, right hemisphere 212.2
2429 Female, age 94, left hemisphere 176.7
2240 Male, age 76, both hemispheres 150.0
Lateral amygdala
nTPM: 286.8
2516 Male, age 75, right hemisphere 416.8
2830 Female, age 67, right hemisphere 306.0
2255 Female, age 91, right hemisphere 283.9
2256 Male, age 80, left hemisphere 281.1
1883 Male, age 76, both hemispheres 220.1
2534 Female, age 94, left hemisphere 213.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

530.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 530.5
Samples: 152

Max nTPM: 1681.1
Min nTPM: 3.3
Std nTPM: 284.5
Median nTPM: 493.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1681.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1532.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1303.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1279.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1227.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1147.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1133.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1118.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1113.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1107.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1083.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1077.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1051.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 945.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 913.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 889.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 853.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 851.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 833.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 820.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 798.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 790.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 781.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 772.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 766.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 759.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 750.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 737.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 726.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 716.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 715.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 694.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 694.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 683.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 663.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 651.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 640.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 639.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 639.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 635.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 628.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 606.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 600.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 594.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 592.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 585.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 579.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 579.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 577.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 575.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 572.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 570.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 566.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 563.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 562.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 559.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 551.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 549.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 548.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 546.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 543.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 543.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 542.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 538.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 534.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 532.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 531.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 522.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 520.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 513.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 504.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 503.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 502.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 502.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 501.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 495.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 490.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 488.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 481.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 476.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 476.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 470.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 468.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 464.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 463.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 455.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 441.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 440.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 440.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 437.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 436.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 431.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 429.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 429.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 421.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 419.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 418.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 414.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 399.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 390.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 370.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 365.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 361.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 360.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 355.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 340.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 340.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 336.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 334.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 330.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 326.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 322.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 321.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 321.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 316.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 313.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 309.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 309.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 299.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 295.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 292.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 290.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 283.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 281.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 279.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 279.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 277.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 273.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 264.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 262.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 259.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 256.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 252.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 246.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 241.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 240.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 231.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 229.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 216.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 209.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 204.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 195.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 190.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 186.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 179.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 168.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 160.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 120.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 116.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.9
FF:10151-102I7 76 years, female 96.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
Pig sample Sample description nTPM
Amygdala
nTPM: 109.5
Samples: 4

Max nTPM: 128.6
Min nTPM: 82.2
Sample A Female 128.6
Sample B Female 106.5
Sample C Male 120.6
Sample D Male 82.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 76.6
Samples: 4

Max nTPM: 88.8
Min nTPM: 68.6
Sample A Male 68.6
Sample B Male 71.0
Sample C Female 88.8
Sample D Female 77.8

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