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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:160.0 nTPM
HPA Brain:288.1 nTPM
GTEx:160.0 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:140.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 225.7
2565 Male, age 75, midline 334.0
2048 Male, age 55, midline 213.5
2194 Female, age 79, both hemispheres 200.9
1981 Female, age 72, midline 190.3
2816 Male, age 47, midline 189.8
Cervical spinal cord, dorsal horn
nTPM: 168.0
2721 Male, age 90, both hemispheres 225.3
1877 Male, age 55, unknown 189.0
2297 Male, age 75, both hemispheres 184.6
2173 Female, age 72, unknown 182.6
2069 Male, age 47, both hemispheres 121.5
2296 Male, age 66, both hemispheres 104.8
Cervical spinal cord, ventral horn
nTPM: 288.1
2480 Male, age 75, both hemispheres 537.8
2809 Male, age 90, both hemispheres 339.0
2295 Male, age 66, both hemispheres 308.0
2820 Female, age 79, both hemispheres 202.8
2068 Male, age 55, unknown 201.2
2098 Female, age 72, unknown 139.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 160.0
Samples: 159

Max nTPM: 518.7
Min nTPM: 34.0
Std nTPM: 79.2
Median nTPM: 134.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 518.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 473.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 371.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 352.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 338.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 337.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 335.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 318.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 294.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 294.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 294.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 293.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 291.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 277.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 272.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 265.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 265.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 261.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 261.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 257.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 249.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 248.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 246.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 240.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 232.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 228.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 228.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 224.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 222.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 220.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 219.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 215.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 212.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 210.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 206.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 204.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 203.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 203.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 200.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 199.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 195.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 194.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 188.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 185.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 183.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 182.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 179.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 178.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 177.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 176.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 172.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 171.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 170.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 169.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 169.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 166.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 164.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 162.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 160.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 160.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 159.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 157.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 154.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 146.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 144.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 144.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 142.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 137.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 136.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 134.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 134.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 134.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 134.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 133.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 126.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 125.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 124.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 124.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 123.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 123.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 122.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 122.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 120.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 120.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 120.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 119.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 118.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 117.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 117.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 116.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 116.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 115.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 114.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 113.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 113.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 113.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 112.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 112.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 112.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 110.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 109.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 109.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 107.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 106.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 105.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 104.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 103.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 102.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 101.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 101.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 101.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 101.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 100.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 97.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 97.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 97.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 97.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 96.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 95.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 92.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 88.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 86.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 85.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 83.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 82.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 81.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 78.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 76.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 68.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 67.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 63.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 54.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 51.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 50.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 34.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 37.7
FF:10181-103D1 60 years, female 45.3
FF:10159-103A6 76 years, female 30.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 117.7
Samples: 4

Max nTPM: 137.4
Min nTPM: 99.2
Sample A Female 99.2
Sample B Female 114.7
Sample C Male 137.4
Sample D Male 119.4
Ventral spinal cord
nTPM: 140.1
Samples: 4

Max nTPM: 162.1
Min nTPM: 125.5
Sample A Female 129.2
Sample B Female 143.6
Sample C Male 162.1
Sample D Male 125.5

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