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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:72.0 nTPM
HPA Brain:68.7 nTPM
GTEx:72.0 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:103.4 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.7
Sample id Sample description nTPM
Amygdala
nTPM: 62.0
2695 Female, age 67, right hemisphere 72.0
2514 Male, age 75, right hemisphere 71.5
1987 Female, age 91, left hemisphere 57.4
2517 Female, age 94, left hemisphere 56.6
2814 Male, age 76, right hemisphere 52.6
Basal amygdala
nTPM: 60.5
2609 Male, age 75, right hemisphere 110.1
2243 Female, age 91, right hemisphere 80.1
1955 Male, age 76, both hemispheres 52.5
2110 Male, age 80, left hemisphere 50.6
2685 Female, age 94, left hemisphere 42.5
2827 Female, age 67, right hemisphere 27.2
Central amygdala
nTPM: 68.7
2515 Male, age 75, right hemisphere 100.9
2239 Male, age 80, left hemisphere 69.0
2701 Female, age 91, right hemisphere 60.8
1905 Male, age 76, both hemispheres 57.2
2826 Female, age 94, left hemisphere 55.6
Corticomedial amygdala
nTPM: 59.2
2428 Male, age 75, right hemisphere 97.2
2242 Female, age 91, right hemisphere 71.4
2829 Male, age 80, left hemisphere 66.8
2429 Female, age 94, left hemisphere 45.3
2240 Male, age 76, both hemispheres 42.6
2535 Female, age 67, right hemisphere 31.9
Lateral amygdala
nTPM: 56.3
2516 Male, age 75, right hemisphere 87.3
2255 Female, age 91, right hemisphere 65.8
2256 Male, age 80, left hemisphere 55.2
1883 Male, age 76, both hemispheres 49.3
2534 Female, age 94, left hemisphere 48.3
2830 Female, age 67, right hemisphere 31.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 72.0
Samples: 152

Max nTPM: 208.3
Min nTPM: 0.6
Std nTPM: 37.7
Median nTPM: 70.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 208.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 186.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 185.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 177.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 160.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 156.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 140.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 140.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 138.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 129.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 123.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 120.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 119.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 117.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 116.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 114.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 114.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 107.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 103.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 98.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 92.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 90.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 88.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 87.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 85.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 84.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 84.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 82.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 82.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 81.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 79.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 79.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 78.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 77.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 76.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 76.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 73.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 73.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 73.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 73.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 73.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 73.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 71.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 71.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 69.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 68.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 68.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 67.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 67.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 67.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 67.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 66.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 64.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 63.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 62.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 61.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 61.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 60.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 58.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 57.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 56.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 55.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 55.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 55.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 54.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 51.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 50.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 49.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 48.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 47.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 47.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 46.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 46.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 45.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 43.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 41.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 41.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 40.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 37.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 34.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 33.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 31.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 30.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 29.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 24.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 22.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 20.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 20.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 20.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 20.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 18.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 17.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 15.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 14.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 12.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 11.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 9.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 6.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 0.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 67.1
FF:10151-102I7 76 years, female 67.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.5
Pig sample Sample description nTPM
Amygdala
nTPM: 18.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 14.5
Sample A Female 23.2
Sample B Female 19.1
Sample C Male 17.2
Sample D Male 14.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 103.4
Samples: 4

Max nTPM: 128.7
Min nTPM: 87.0
Sample A Male 91.0
Sample B Male 87.0
Sample C Female 128.7
Sample D Female 106.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
81600566 Antisense, RP_080625_04_G09, Mouse strain C57BL/6J (56 days, male) 0.2
100145352 Antisense, RP_110519_02_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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