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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:792.5 nTPM
HPA Brain:241.1 nTPM
GTEx:792.5 nTPM
FANTOM5:162.4 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:502.8 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.1
Sample id Sample description nTPM
Amygdala
nTPM: 241.1
2695 Female, age 67, right hemisphere 321.8
2814 Male, age 76, right hemisphere 258.2
2514 Male, age 75, right hemisphere 235.0
2517 Female, age 94, left hemisphere 199.7
1987 Female, age 91, left hemisphere 191.0
Basal amygdala
nTPM: 212.9
2827 Female, age 67, right hemisphere 246.4
2609 Male, age 75, right hemisphere 237.7
1955 Male, age 76, both hemispheres 231.9
2243 Female, age 91, right hemisphere 194.1
2110 Male, age 80, left hemisphere 190.6
2685 Female, age 94, left hemisphere 176.6
Central amygdala
nTPM: 218.3
2826 Female, age 94, left hemisphere 298.7
1905 Male, age 76, both hemispheres 259.1
2239 Male, age 80, left hemisphere 207.8
2701 Female, age 91, right hemisphere 169.1
2515 Male, age 75, right hemisphere 157.0
Corticomedial amygdala
nTPM: 195.3
2535 Female, age 67, right hemisphere 209.7
2829 Male, age 80, left hemisphere 209.7
2240 Male, age 76, both hemispheres 203.3
2242 Female, age 91, right hemisphere 193.7
2429 Female, age 94, left hemisphere 192.0
2428 Male, age 75, right hemisphere 163.4
Lateral amygdala
nTPM: 204.8
2830 Female, age 67, right hemisphere 241.7
2534 Female, age 94, left hemisphere 240.0
1883 Male, age 76, both hemispheres 237.2
2516 Male, age 75, right hemisphere 229.3
2256 Male, age 80, left hemisphere 149.1
2255 Female, age 91, right hemisphere 131.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

792.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 792.5
Samples: 152

Max nTPM: 2719.1
Min nTPM: 244.8
Std nTPM: 316.4
Median nTPM: 749.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2719.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1980.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1946.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1835.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1604.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1591.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1546.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1542.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1334.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1333.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1124.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1102.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1070.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1040.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1023.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1021.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1019.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1009.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1002.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 997.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 997.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 987.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 983.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 966.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 965.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 937.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 937.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 936.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 934.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 931.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 930.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 928.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 918.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 909.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 903.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 888.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 880.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 878.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 876.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 872.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 866.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 860.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 854.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 853.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 847.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 820.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 816.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 812.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 811.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 806.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 806.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 805.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 803.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 803.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 793.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 793.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 791.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 790.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 786.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 786.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 784.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 782.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 780.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 780.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 778.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 778.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 777.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 775.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 771.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 770.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 769.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 769.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 766.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 757.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 757.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 753.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 744.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 742.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 738.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 738.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 736.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 732.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 729.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 717.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 716.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 711.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 698.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 694.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 679.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 677.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 676.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 672.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 670.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 669.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 667.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 667.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 661.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 657.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 657.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 656.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 652.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 649.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 640.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 636.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 636.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 634.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 631.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 628.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 626.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 622.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 621.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 618.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 611.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 609.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 604.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 603.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 601.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 601.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 585.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 582.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 582.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 581.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 578.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 574.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 569.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 569.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 564.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 558.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 556.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 555.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 549.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 549.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 548.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 542.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 535.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 532.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 532.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 529.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 525.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 521.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 511.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 503.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 492.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 478.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 464.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 446.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 445.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 416.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 407.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 402.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 400.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 244.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 162.4
FF:10151-102I7 76 years, female 162.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Pig sample Sample description nTPM
Amygdala
nTPM: 32.1
Samples: 4

Max nTPM: 44.3
Min nTPM: 22.7
Sample A Female 44.3
Sample B Female 31.9
Sample C Male 29.4
Sample D Male 22.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

502.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 502.8
Samples: 4

Max nTPM: 586.3
Min nTPM: 446.2
Sample A Male 446.2
Sample B Male 518.1
Sample C Female 586.3
Sample D Female 460.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 1.2

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