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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:64.5 nTPM
FANTOM5:162.0 Scaled Tags Per Million
Pig:94.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026430Antibody CAB003834Antibody CAB080093
Glial cells Not detectedLowMedium
Neuronal cells MediumLowLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 64.5
Samples: 246

Max nTPM: 190.4
Min nTPM: 18.2
Std nTPM: 36.7
Median nTPM: 58.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 190.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 165.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 144.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 143.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 142.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 142.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 139.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 137.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 136.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 136.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 133.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 130.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 130.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 129.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 128.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 127.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 127.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 125.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 123.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 122.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 121.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 121.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 121.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 120.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 119.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 118.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 118.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 117.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 116.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 114.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 114.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 113.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 113.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 112.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 112.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 108.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 108.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 108.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 107.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 106.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 106.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 106.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 104.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 102.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 102.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 98.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 97.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 97.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 96.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 94.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 94.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 93.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 92.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 92.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 91.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 91.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 91.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 89.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 88.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 85.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 85.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 84.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 83.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 83.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 83.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 83.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 83.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 82.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 82.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 81.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 80.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 79.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 79.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 78.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 78.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 76.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 75.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 75.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 75.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 74.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 74.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 74.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 72.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 72.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 72.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 70.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 70.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 70.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 70.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 70.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 69.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 69.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 69.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 68.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 68.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 67.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 67.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 66.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 66.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 64.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 64.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 63.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 63.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 62.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 61.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 61.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 60.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 60.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 59.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 59.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 58.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 57.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 56.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 55.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 55.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 54.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 53.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 52.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 52.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 52.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 51.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 50.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 50.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 50.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 49.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 48.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 48.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 48.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 45.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 45.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 45.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 44.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 44.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 43.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 43.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 43.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 42.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 42.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 41.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 40.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 40.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 40.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 40.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 40.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 39.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 39.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 38.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 38.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 38.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 37.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 37.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 36.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 36.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 35.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 35.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 35.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 34.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 34.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 33.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 33.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 33.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 33.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 32.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 32.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 32.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 31.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 31.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 31.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 30.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 30.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 30.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 29.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 29.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 28.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 28.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 27.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 27.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 27.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 26.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 26.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 26.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 25.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 25.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 25.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 25.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 25.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 24.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 24.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 24.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 24.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 24.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 23.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 23.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 23.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 23.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 23.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 22.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 22.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 22.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 22.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 22.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 21.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 21.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 21.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 20.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 20.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 19.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 19.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 18.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 18.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 162.0
FF:10164-103B2 76 years, female 162.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.9
Pig sample Sample description nTPM
Caudate
nTPM: 95.0
Samples: 4

Max nTPM: 112.2
Min nTPM: 81.3
Sample A Female 91.7
Sample B Female 94.6
Sample C Male 112.2
Sample D Male 81.3

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