MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:179.3 nTPM
HPA Brain:93.8 nTPM
GTEx:179.3 nTPM
FANTOM5:172.4 Scaled Tags Per Million
Pig:269.9 nTPM
Mouse:385.4 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.5
2019 Male, age 18, unknown 96.1
1827 Male, age 72, unknown 88.5
2411 Female, age 72, unknown 80.7
1870 Female, age 42, unknown 80.0
2666 Male, age 74, left hemisphere 70.6
2586 Male, age 75, left hemisphere 69.1
2828 Female, age 72, unknown 65.7
2219 Male, age 76, both hemispheres 63.1
1833 Male, age 53, unknown 62.0
1830 Male, age 51, unknown 59.0
Dorsal raphe nucleus
nTPM: 83.1
2298 Female, age 72, unknown 118.6
1828 Male, age 53, unknown 82.2
2047 Male, age 72, unknown 79.9
2750 Male, age 76, both hemispheres 75.1
2016 Female, age 72, unknown 59.8
Inferior colliculus
nTPM: 75.1
2097 Female, age 72, unknown 106.0
1890 Male, age 53, unknown 76.5
1848 Female, age 42, unknown 66.7
2849 Male, age 72, unknown 51.2
Median raphe nucleus
nTPM: 66.8
2220 Male, age 76, midline 66.8
Periaquaductal grey, anterior
nTPM: 75.5
1795 Male, age 51, unknown 75.9
2502 Female, age 75, unknown 75.3
1947 Male, age 18, unknown 75.2
Periaquaductal grey, dorsal
nTPM: 62.4
1840 Male, age 53, unknown 69.5
1831 Male, age 72, unknown 65.6
2464 Female, age 72, unknown 62.6
2850 Male, age 76, both hemispheres 52.2
Periaquaductal grey, lateral
nTPM: 60.6
2053 Male, age 18, unknown 66.2
2272 Male, age 74, both hemispheres 61.5
2140 Male, age 76, both hemispheres 54.0
Pretectal area
nTPM: 85.9
2007 Male, age 72, unknown 117.1
1816 Male, age 51, unknown 114.1
1944 Female, age 72, unknown 98.6
1817 Female, age 42, unknown 98.4
1815 Male, age 53, unknown 86.4
2224 Female, age 72, unknown 83.0
2667 Female, age 75, unknown 79.5
2273 Male, age 74, both hemispheres 75.4
2316 Male, age 76, right hemisphere 70.2
2825 Male, age 18, unknown 63.3
2407 Male, age 75, both hemispheres 58.5
Red nucleus
nTPM: 68.6
1821 Female, age 72, unknown 98.0
2785 Male, age 18, unknown 79.0
2725 Female, age 75, unknown 74.5
2503 Female, age 72, unknown 69.4
2823 Male, age 76, right hemisphere 67.5
2769 Male, age 72, unknown 65.6
1954 Female, age 42, unknown 65.1
1865 Male, age 51, unknown 63.6
1904 Male, age 53, unknown 63.3
2584 Male, age 75, left hemisphere 63.1
2227 Male, age 72, unknown 61.6
2588 Male, age 74, left hemisphere 52.2
Substantia nigra
nTPM: 93.8
1851 Male, age 51, unknown 117.9
1916 Female, age 42, unknown 117.8
2241 Male, age 72, unknown 106.0
1941 Male, age 53, unknown 104.5
1889 Female, age 72, unknown 103.8
2409 Female, age 72, unknown 98.1
2665 Male, age 74, both hemispheres 80.5
2590 Female, age 75, unknown 75.2
2583 Male, age 75, right hemisphere 69.5
2699 Male, age 18, unknown 64.9
Superior colliculus
nTPM: 74.0
2087 Female, age 72, unknown 93.5
2668 Female, age 75, unknown 86.1
2261 Male, age 18, unknown 81.4
1796 Male, age 53, unknown 78.2
2587 Male, age 74, left hemisphere 78.2
1895 Male, age 76, right hemisphere 72.7
1913 Female, age 42, unknown 67.0
2664 Male, age 75, both hemispheres 63.4
1839 Male, age 51, unknown 61.6
1995 Male, age 72, unknown 57.6
Ventral tegmental area
nTPM: 79.3
1915 Female, age 42, unknown 102.1
2410 Female, age 72, unknown 97.8
2218 Male, age 76, both hemispheres 71.1
2223 Female, age 72, unknown 70.1
1942 Male, age 51, unknown 69.1
2021 Male, age 53, unknown 65.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 179.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.3
Samples: 139

Max nTPM: 375.4
Min nTPM: 93.6
Std nTPM: 50.3
Median nTPM: 164.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 375.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 334.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 316.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 299.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 295.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 288.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 287.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 284.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 269.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 267.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 267.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 172.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.4
FF:10158-103A5 76 years, female 172.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 269.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 201.8
Samples: 4

Max nTPM: 315.8
Min nTPM: 123.1
Sample A Female 315.8
Sample B Female 157.1
Sample C Male 211.1
Sample D Male 123.1
Midbrain
nTPM: 237.8
Samples: 4

Max nTPM: 301.1
Min nTPM: 205.8
Sample A Female 205.8
Sample B Female 209.9
Sample C Male 301.1
Sample D Male 234.5
Periaqueductal gray
nTPM: 161.3
Samples: 3

Max nTPM: 195.2
Min nTPM: 137.0
Sample B Female 151.6
Sample C Male 195.2
Sample D Male 137.0
Superior colliculi
nTPM: 269.9
Samples: 4

Max nTPM: 330.2
Min nTPM: 210.9
Sample A Female 330.2
Sample B Female 210.9
Sample C Male 322.8
Sample D Male 215.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 385.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 385.4
Samples: 4

Max nTPM: 425.5
Min nTPM: 338.8
Sample A Male 425.5
Sample B Male 387.2
Sample C Female 338.8
Sample D Female 390.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 9.4
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 7.2

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