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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:202.2 nTPM
HPA Brain:87.2 nTPM
GTEx:202.2 nTPM
FANTOM5:220.6 Scaled Tags Per Million
Pig:151.1 nTPM
Mouse:411.9 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
Sample id Sample description nTPM
Amygdala
nTPM: 87.2
2814 Male, age 76, right hemisphere 98.8
2514 Male, age 75, right hemisphere 92.3
2517 Female, age 94, left hemisphere 85.3
1987 Female, age 91, left hemisphere 83.1
2695 Female, age 67, right hemisphere 76.6
Basal amygdala
nTPM: 73.2
2685 Female, age 94, left hemisphere 84.2
2110 Male, age 80, left hemisphere 80.1
2609 Male, age 75, right hemisphere 79.9
2827 Female, age 67, right hemisphere 70.4
2243 Female, age 91, right hemisphere 62.6
1955 Male, age 76, both hemispheres 62.2
Central amygdala
nTPM: 80.1
2826 Female, age 94, left hemisphere 113.6
1905 Male, age 76, both hemispheres 87.7
2515 Male, age 75, right hemisphere 87.6
2239 Male, age 80, left hemisphere 57.9
2701 Female, age 91, right hemisphere 53.9
Corticomedial amygdala
nTPM: 71.9
2428 Male, age 75, right hemisphere 95.3
2829 Male, age 80, left hemisphere 87.7
2429 Female, age 94, left hemisphere 76.1
2242 Female, age 91, right hemisphere 62.6
2240 Male, age 76, both hemispheres 57.6
2535 Female, age 67, right hemisphere 52.4
Lateral amygdala
nTPM: 77.1
2534 Female, age 94, left hemisphere 97.6
2516 Male, age 75, right hemisphere 97.2
1883 Male, age 76, both hemispheres 88.5
2830 Female, age 67, right hemisphere 73.9
2256 Male, age 80, left hemisphere 54.3
2255 Female, age 91, right hemisphere 51.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 202.2
Samples: 152

Max nTPM: 848.6
Min nTPM: 98.6
Std nTPM: 90.7
Median nTPM: 179.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 848.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 516.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 502.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 454.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 432.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 421.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 374.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 347.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 344.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 310.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 309.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 301.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 291.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 287.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 287.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 285.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 281.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 278.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 272.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 266.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 264.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 263.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 259.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 257.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 256.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 256.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 253.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 247.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 247.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 246.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 245.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 245.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 245.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 244.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 243.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 237.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 233.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 233.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 231.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 229.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 228.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 226.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 225.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 225.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 222.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 219.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 219.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 217.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 215.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 212.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 210.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 210.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 200.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 199.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 198.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 197.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 196.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 195.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 194.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 194.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 190.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 190.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 189.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 189.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 187.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 186.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 185.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 185.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 184.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 180.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 179.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 178.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 178.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 176.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 174.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 174.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 174.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 173.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 173.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 172.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 172.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 171.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 171.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 171.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 168.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 168.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 168.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 167.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 166.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 164.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 163.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 161.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 161.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 160.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 154.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 153.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 150.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 150.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 148.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 145.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 144.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 144.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 143.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 143.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 142.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 136.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 134.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 134.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 133.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 132.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 127.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 126.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 125.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 123.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 122.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 120.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 118.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 115.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 114.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 111.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 106.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 106.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 98.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 220.6
FF:10151-102I7 76 years, female 220.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.1
Pig sample Sample description nTPM
Amygdala
nTPM: 151.1
Samples: 4

Max nTPM: 217.9
Min nTPM: 123.6
Sample A Female 217.9
Sample B Female 131.0
Sample C Male 131.7
Sample D Male 123.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 411.9
Samples: 4

Max nTPM: 427.2
Min nTPM: 401.3
Sample A Male 401.3
Sample B Male 417.7
Sample C Female 427.2
Sample D Female 401.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 12.2
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 7.8

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