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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.7 nTPM
HPA:190.7 nTPM
GTEx:158.4 nTPM
FANTOM5:245.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044577
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.7
overview
Male, age 65
Small intestine sample 232
nTPM: 179.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 230.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 170.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 182.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 158.4
Samples: 187

Max nTPM: 289.6
Min nTPM: 82.3
Std nTPM: 50.5
Median nTPM: 146.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 289.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 287.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 286.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 282.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 274.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 274.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 273.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 270.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 268.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 263.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 262.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 250.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 249.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 244.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 241.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 239.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 239.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 239.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 239.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 234.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 231.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 230.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 228.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 227.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 225.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 222.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 217.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 216.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 216.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 216.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 214.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 213.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 211.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 208.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 207.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 205.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 205.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 203.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 203.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 201.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 200.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 200.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 198.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 196.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 195.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 193.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 190.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 187.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 187.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 187.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 184.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 184.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 184.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 183.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 181.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 180.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 179.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 179.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 178.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 176.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 175.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 175.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 174.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 174.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 173.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 172.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 168.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 166.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 165.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 164.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 163.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 163.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 161.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 160.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 158.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 157.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 156.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 156.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 155.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 154.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 154.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 153.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 152.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 150.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 150.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 150.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 150.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 149.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 148.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 148.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 147.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 146.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 146.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 146.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 145.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 143.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 143.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 143.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 142.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 142.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 141.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 140.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 139.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 138.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 138.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 137.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 136.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 136.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 135.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 134.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 134.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 132.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 131.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 130.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 130.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 130.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 129.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 129.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 129.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 128.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 127.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 127.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 126.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 125.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 124.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 124.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 124.2
GTEX-1192X-2526-SM-59868 50-59 years, male 124.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 124.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 123.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 123.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 123.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 123.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 123.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 123.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 122.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 122.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 121.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 121.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 121.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 121.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 121.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 120.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 117.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 116.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 115.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 115.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 115.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 115.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 114.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 114.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 113.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 111.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 111.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 111.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 111.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 110.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 110.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 109.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 108.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 108.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 106.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 105.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 105.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 104.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 104.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 102.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 102.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 101.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 100.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 100.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 99.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 99.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 99.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 99.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 98.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 98.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 98.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 97.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 96.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 95.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 93.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 92.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 89.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 87.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 86.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 82.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

245.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 245.3
FF:10024-101D6 15,40,85 years, mixed 245.3

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