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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:150.7 nTPM
FANTOM5:227.1 Scaled Tags Per Million
Pig:238.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044577
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 150.7
Samples: 246

Max nTPM: 439.7
Min nTPM: 78.5
Std nTPM: 50.4
Median nTPM: 138.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 439.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 355.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 353.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 335.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 316.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 298.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 286.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 282.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 242.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 242.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 239.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 238.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 231.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 230.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 230.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 229.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 229.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 221.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 221.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 220.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 218.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 215.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 211.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 206.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 204.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 202.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 202.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 201.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 201.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 200.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 199.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 199.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 198.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 193.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 192.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 189.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 188.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 188.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 187.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 187.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 187.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 185.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 182.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 181.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 181.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 181.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 181.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 181.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 180.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 179.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 179.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 179.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 179.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 178.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 178.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 178.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 178.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 176.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 176.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 174.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 174.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 173.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 173.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 172.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 172.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 170.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 168.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 166.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 166.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 164.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 163.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 161.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 160.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 160.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 160.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 160.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 159.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 159.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 159.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 158.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 158.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 157.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 157.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 157.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 157.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 157.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 155.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 155.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 154.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 154.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 153.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 153.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 152.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 152.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 152.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 151.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 150.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 150.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 150.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 150.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 149.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 149.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 148.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 147.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 147.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 147.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 146.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 146.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 144.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 144.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 143.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 142.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 142.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 142.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 141.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 141.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 140.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 140.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 139.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 139.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 138.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 138.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 136.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 136.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 136.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 135.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 135.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 135.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 135.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 134.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 134.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 134.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 134.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 133.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 133.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 133.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 132.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 132.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 132.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 131.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 131.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 130.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 130.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 130.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 129.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 129.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 128.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 127.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 127.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 126.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 126.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 126.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 126.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 125.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 125.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 125.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 124.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 124.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 124.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 123.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 123.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 123.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 123.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 122.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 122.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 121.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 121.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 121.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 121.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 119.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 118.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 118.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 117.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 117.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 117.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 117.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 117.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 117.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 116.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 114.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 114.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 114.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 114.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 113.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 113.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 112.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 112.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 112.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 111.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 111.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 110.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 110.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 109.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 109.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 108.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 108.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 107.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 107.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 106.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 106.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 105.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 105.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 104.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 103.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 103.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 102.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 101.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 101.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 100.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 99.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 98.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 97.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 97.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 97.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 96.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 94.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 93.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 92.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 90.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 90.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 89.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 85.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 84.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 83.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 78.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

227.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 227.1
FF:10164-103B2 76 years, female 227.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.9
Pig sample Sample description nTPM
Caudate
nTPM: 238.9
Samples: 4

Max nTPM: 267.3
Min nTPM: 220.4
Sample A Female 220.4
Sample B Female 234.2
Sample C Male 267.3
Sample D Male 233.7

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