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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:197.1 nTPM
HPA Brain:132.9 nTPM
GTEx:197.1 nTPM
FANTOM5:162.4 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:274.0 nTPM
Allen mouse:21.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.9
Sample id Sample description nTPM
Amygdala
nTPM: 132.9
2814 Male, age 76, right hemisphere 144.4
2514 Male, age 75, right hemisphere 142.0
2695 Female, age 67, right hemisphere 137.1
1987 Female, age 91, left hemisphere 136.9
2517 Female, age 94, left hemisphere 104.4
Basal amygdala
nTPM: 98.2
2609 Male, age 75, right hemisphere 123.1
2110 Male, age 80, left hemisphere 113.6
1955 Male, age 76, both hemispheres 104.7
2243 Female, age 91, right hemisphere 86.1
2685 Female, age 94, left hemisphere 85.1
2827 Female, age 67, right hemisphere 76.5
Central amygdala
nTPM: 107.4
1905 Male, age 76, both hemispheres 127.0
2515 Male, age 75, right hemisphere 118.5
2826 Female, age 94, left hemisphere 105.0
2239 Male, age 80, left hemisphere 94.4
2701 Female, age 91, right hemisphere 92.0
Corticomedial amygdala
nTPM: 99.2
2428 Male, age 75, right hemisphere 122.7
2829 Male, age 80, left hemisphere 116.8
2429 Female, age 94, left hemisphere 100.1
2240 Male, age 76, both hemispheres 97.3
2242 Female, age 91, right hemisphere 90.6
2535 Female, age 67, right hemisphere 67.9
Lateral amygdala
nTPM: 100.5
2516 Male, age 75, right hemisphere 125.9
1883 Male, age 76, both hemispheres 122.6
2534 Female, age 94, left hemisphere 97.0
2256 Male, age 80, left hemisphere 89.2
2830 Female, age 67, right hemisphere 85.9
2255 Female, age 91, right hemisphere 82.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 197.1
Samples: 152

Max nTPM: 353.0
Min nTPM: 134.7
Std nTPM: 40.4
Median nTPM: 185.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 353.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 315.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 311.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 300.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 299.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 297.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 293.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 292.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 287.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 286.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 279.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 264.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 263.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 260.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 254.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 252.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 250.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 241.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 239.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 235.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 233.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 232.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 230.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 228.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 227.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 227.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 226.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 226.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 224.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 219.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 219.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 219.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 219.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 218.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 217.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 216.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 215.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 214.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 213.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 211.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 210.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 208.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 207.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 207.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 207.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 206.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 199.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 199.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 199.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 199.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 198.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 198.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 198.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 198.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 198.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 197.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 196.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 196.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 195.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 195.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 195.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 195.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 193.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 192.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 191.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 189.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 188.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 187.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 185.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 185.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 184.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 183.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 183.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 183.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 183.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 183.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 182.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 182.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 180.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 180.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 180.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 180.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 179.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 179.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 179.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 179.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 178.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 178.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 177.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 176.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 175.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 175.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 174.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 173.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 173.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 172.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 171.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 171.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 168.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 168.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 168.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 167.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 167.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 166.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 166.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 164.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 164.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 164.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 164.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 162.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 159.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 159.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 158.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 157.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 157.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 155.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 155.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 155.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 155.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 155.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 154.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 153.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 153.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 148.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 148.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 145.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 145.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 144.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 141.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 134.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 162.4
FF:10151-102I7 76 years, female 162.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.8
Pig sample Sample description nTPM
Amygdala
nTPM: 55.8
Samples: 4

Max nTPM: 59.7
Min nTPM: 52.9
Sample A Female 57.4
Sample B Female 59.7
Sample C Male 52.9
Sample D Male 53.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 274.0
Samples: 4

Max nTPM: 294.8
Min nTPM: 260.7
Sample A Male 273.6
Sample B Male 294.8
Sample C Female 260.7
Sample D Female 266.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.3
70593287 Antisense, RP_050407_01_G07, Mouse strain C57BL/6J (56 days, male) 21.3

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