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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:216.9 nTPM
HPA Brain:175.8 nTPM
GTEx:216.9 nTPM
FANTOM5:187.7 Scaled Tags Per Million
Pig:78.2 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.0
1981 Female, age 72, midline 206.1
2048 Male, age 55, midline 174.2
2565 Male, age 75, midline 166.1
2816 Male, age 47, midline 132.5
2194 Female, age 79, both hemispheres 126.2
Cervical spinal cord, dorsal horn
nTPM: 175.8
2173 Female, age 72, unknown 231.1
2069 Male, age 47, both hemispheres 204.6
2296 Male, age 66, both hemispheres 198.4
1877 Male, age 55, unknown 155.8
2297 Male, age 75, both hemispheres 135.0
2721 Male, age 90, both hemispheres 130.2
Cervical spinal cord, ventral horn
nTPM: 160.1
2098 Female, age 72, unknown 235.9
2809 Male, age 90, both hemispheres 171.4
2480 Male, age 75, both hemispheres 158.4
2068 Male, age 55, unknown 145.7
2295 Male, age 66, both hemispheres 142.9
2820 Female, age 79, both hemispheres 106.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 216.9
Samples: 159

Max nTPM: 348.4
Min nTPM: 124.9
Std nTPM: 38.0
Median nTPM: 212.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 348.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 342.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 331.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 322.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 313.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 300.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 292.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 289.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 286.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 286.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 279.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 278.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 275.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 272.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 271.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 267.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 264.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 258.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 258.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 257.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 257.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 257.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 252.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 251.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 250.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 249.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 249.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 248.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 248.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 247.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 246.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 245.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 243.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 242.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 241.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 241.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 240.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 239.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 239.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 238.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 237.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 236.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 235.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 233.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 231.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 230.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 229.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 228.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 227.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 227.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 226.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 226.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 226.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 225.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 225.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 224.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 224.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 223.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 223.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 222.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 222.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 222.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 221.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 221.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 220.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 220.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 220.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 219.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 218.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 218.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 218.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 217.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 217.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 216.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 215.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 215.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 213.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 213.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 212.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 212.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 211.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 211.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 211.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 209.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 209.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 209.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 208.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 208.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 208.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 208.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 207.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 206.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 204.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 204.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 203.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 201.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 200.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 199.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 199.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 198.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 198.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 198.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 197.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 196.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 196.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 195.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 194.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 194.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 193.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 193.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 193.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 192.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 192.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 192.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 191.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 191.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 190.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 189.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 188.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 188.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 187.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 187.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 186.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 186.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 186.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 183.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 182.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 182.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 181.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 180.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 179.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 179.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 178.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 178.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 177.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 177.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 174.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 174.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 172.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 171.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 171.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 171.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 170.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 170.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 169.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 167.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 167.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 164.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 162.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 160.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 187.7
FF:10159-103A6 76 years, female 219.4
FF:10181-103D1 60 years, female 156.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 68.2
Samples: 4

Max nTPM: 74.5
Min nTPM: 62.6
Sample A Female 63.7
Sample B Female 74.5
Sample C Male 72.1
Sample D Male 62.6
Ventral spinal cord
nTPM: 78.2
Samples: 4

Max nTPM: 87.3
Min nTPM: 74.1
Sample A Female 76.4
Sample B Female 87.3
Sample C Male 74.1
Sample D Male 75.0

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