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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:352.5 nTPM
HPA:352.5 nTPM
GTEx:170.4 nTPM
FANTOM5:1368.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041152
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.5
overview
Male, age 65
Small intestine sample 232
nTPM: 364.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 482
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 365.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 197.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 170.4
Samples: 187

Max nTPM: 3468.2
Min nTPM: 10.2
Std nTPM: 333.1
Median nTPM: 80.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 3468.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1882.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1424.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1280.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 883.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 736.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 699.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 659.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 605.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 600.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 531.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 465.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 457.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 440.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 383.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 383.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 367.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 353.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 344.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 331.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 320.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 319.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 314.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 305.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 299.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 283.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 279.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 270.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 244.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 243.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 234.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 216.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 208.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 205.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 203.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 202.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 190.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 190.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 173.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 166.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 165.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 161.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 161.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 159.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 159.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 157.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 155.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 153.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 148.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 148.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 146.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 144.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 143.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 142.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 138.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 134.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 132.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 131.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 129.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 128.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 128.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 125.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 125.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 125.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 124.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 124.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 123.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 123.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 122.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 121.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 118.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 118.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 116.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 115.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 113.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 113.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 111.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 110.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 110.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 105.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 104.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 104.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 101.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 100.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 97.7
GTEX-1192X-2526-SM-59868 50-59 years, male 97.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 95.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 95.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 95.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 90.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 88.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 82.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 82.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 80.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 80.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 78.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 77.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 77.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 74.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 73.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 71.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 71.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 70.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 68.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 67.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 65.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 65.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 65.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 64.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 64.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 63.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 62.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 62.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 62.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 61.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 61.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 60.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 59.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 58.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 58.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 57.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 56.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 55.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 55.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 55.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 55.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 53.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 51.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 50.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 50.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 48.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 48.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 47.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 47.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 46.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 46.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 45.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 43.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 43.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 42.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 41.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 40.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 40.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 38.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 37.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 37.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 36.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 35.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 35.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 34.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 34.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 33.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 33.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 33.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 33.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 33.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 32.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 31.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 31.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 28.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 27.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 27.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 27.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 26.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 26.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 26.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 25.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 25.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 24.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 23.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 22.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 22.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 22.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 21.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 21.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 21.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 21.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 20.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 20.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 18.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 17.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 13.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 13.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1368.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1368.3
FF:10024-101D6 15,40,85 years, mixed 1368.3

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