We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TRAPPC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TRAPPC1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.9 nTPM
HPA Brain:85.9 nTPM
GTEx:134.9 nTPM
FANTOM5:53.0 Scaled Tags Per Million
Mouse:107.2 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.9
Sample id Sample description nTPM
Amygdala
nTPM: 85.4
2814 Male, age 76, right hemisphere 136.4
2695 Female, age 67, right hemisphere 80.3
2514 Male, age 75, right hemisphere 78.9
1987 Female, age 91, left hemisphere 69.4
2517 Female, age 94, left hemisphere 61.9
Basal amygdala
nTPM: 68.6
1955 Male, age 76, both hemispheres 91.0
2609 Male, age 75, right hemisphere 74.9
2243 Female, age 91, right hemisphere 71.1
2685 Female, age 94, left hemisphere 69.4
2110 Male, age 80, left hemisphere 60.8
2827 Female, age 67, right hemisphere 44.3
Central amygdala
nTPM: 85.9
1905 Male, age 76, both hemispheres 123.5
2826 Female, age 94, left hemisphere 90.3
2701 Female, age 91, right hemisphere 78.5
2515 Male, age 75, right hemisphere 72.2
2239 Male, age 80, left hemisphere 64.8
Corticomedial amygdala
nTPM: 67.1
2240 Male, age 76, both hemispheres 81.4
2829 Male, age 80, left hemisphere 72.8
2428 Male, age 75, right hemisphere 70.8
2242 Female, age 91, right hemisphere 66.3
2429 Female, age 94, left hemisphere 60.2
2535 Female, age 67, right hemisphere 50.8
Lateral amygdala
nTPM: 75.5
1883 Male, age 76, both hemispheres 118.0
2534 Female, age 94, left hemisphere 88.8
2516 Male, age 75, right hemisphere 72.9
2255 Female, age 91, right hemisphere 65.2
2256 Male, age 80, left hemisphere 58.6
2830 Female, age 67, right hemisphere 49.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.9
Samples: 152

Max nTPM: 309.0
Min nTPM: 70.2
Std nTPM: 38.4
Median nTPM: 130.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 309.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 268.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 238.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 237.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 234.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 224.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 207.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 205.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 203.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 202.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 195.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 192.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 189.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 188.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 182.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 176.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 171.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 168.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 166.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 165.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 164.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 164.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 163.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 160.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 160.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 159.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 157.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 157.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 155.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 155.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 153.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 152.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 152.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 151.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 150.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 147.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 146.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 145.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 145.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 145.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 145.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 144.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 144.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 144.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 142.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 138.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 138.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 137.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 136.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 135.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 134.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 134.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 133.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 130.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 130.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 126.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 126.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 126.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 123.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 123.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 123.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 122.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 122.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 122.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 118.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 118.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 117.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 117.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 116.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 116.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 116.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 114.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 112.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 112.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 111.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 110.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 109.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 105.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 104.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 104.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 103.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 103.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 100.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 99.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 99.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 99.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 98.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 96.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 93.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 93.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 92.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 88.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 82.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 78.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 70.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 53.0
FF:10151-102I7 76 years, female 53.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 107.3
Samples: 4

Max nTPM: 111.8
Min nTPM: 103.7
Sample A Male 103.7
Sample B Male 111.8
Sample C Female 104.2
Sample D Female 109.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
70192039 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.1
71670701 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org