MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:838.0 nTPM
HPA Brain:411.7 nTPM
GTEx:838.0 nTPM
FANTOM5:326.5 Scaled Tags Per Million
Pig:857.9 nTPM
Mouse:223.6 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 411.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 364.6
2828 Female, age 72, unknown 410.7
2411 Female, age 72, unknown 390.1
1870 Female, age 42, unknown 389.5
1827 Male, age 72, unknown 384.1
1833 Male, age 53, unknown 375.0
1830 Male, age 51, unknown 364.5
2666 Male, age 74, left hemisphere 364.3
2019 Male, age 18, unknown 354.7
2586 Male, age 75, left hemisphere 334.0
2219 Male, age 76, both hemispheres 279.0
Dorsal raphe nucleus
nTPM: 399.4
2298 Female, age 72, unknown 463.2
2750 Male, age 76, both hemispheres 398.4
1828 Male, age 53, unknown 389.1
2016 Female, age 72, unknown 380.5
2047 Male, age 72, unknown 365.8
Inferior colliculus
nTPM: 349.2
2097 Female, age 72, unknown 397.8
1890 Male, age 53, unknown 339.7
2849 Male, age 72, unknown 334.1
1848 Female, age 42, unknown 325.2
Median raphe nucleus
nTPM: 411.7
2220 Male, age 76, midline 411.7
Periaquaductal grey, anterior
nTPM: 352.5
1947 Male, age 18, unknown 369.5
1795 Male, age 51, unknown 348.9
2502 Female, age 75, unknown 339.2
Periaquaductal grey, dorsal
nTPM: 348.7
2850 Male, age 76, both hemispheres 380.8
1840 Male, age 53, unknown 360.1
1831 Male, age 72, unknown 343.9
2464 Female, age 72, unknown 310.0
Periaquaductal grey, lateral
nTPM: 353.1
2053 Male, age 18, unknown 357.6
2140 Male, age 76, both hemispheres 355.5
2272 Male, age 74, both hemispheres 346.3
Pretectal area
nTPM: 376.2
1817 Female, age 42, unknown 414.3
2667 Female, age 75, unknown 404.3
1815 Male, age 53, unknown 396.2
2273 Male, age 74, both hemispheres 389.0
1816 Male, age 51, unknown 386.5
2224 Female, age 72, unknown 384.8
2007 Male, age 72, unknown 373.1
2825 Male, age 18, unknown 366.9
1944 Female, age 72, unknown 362.6
2316 Male, age 76, right hemisphere 343.5
2407 Male, age 75, both hemispheres 316.4
Red nucleus
nTPM: 372.5
1821 Female, age 72, unknown 471.2
2503 Female, age 72, unknown 402.6
2823 Male, age 76, right hemisphere 400.3
1904 Male, age 53, unknown 393.9
1865 Male, age 51, unknown 381.5
2227 Male, age 72, unknown 376.4
1954 Female, age 42, unknown 372.4
2769 Male, age 72, unknown 370.5
2725 Female, age 75, unknown 357.8
2785 Male, age 18, unknown 356.5
2588 Male, age 74, left hemisphere 310.4
2584 Male, age 75, left hemisphere 276.7
Substantia nigra
nTPM: 395.0
1916 Female, age 42, unknown 481.6
1851 Male, age 51, unknown 426.4
2699 Male, age 18, unknown 423.0
2241 Male, age 72, unknown 411.7
1889 Female, age 72, unknown 401.2
2665 Male, age 74, both hemispheres 400.1
1941 Male, age 53, unknown 366.2
2409 Female, age 72, unknown 364.5
2590 Female, age 75, unknown 350.8
2583 Male, age 75, right hemisphere 324.7
Superior colliculus
nTPM: 368.2
2587 Male, age 74, left hemisphere 409.9
2668 Female, age 75, unknown 409.3
1913 Female, age 42, unknown 396.3
1995 Male, age 72, unknown 373.4
1796 Male, age 53, unknown 367.0
2087 Female, age 72, unknown 359.6
2261 Male, age 18, unknown 347.9
2664 Male, age 75, both hemispheres 347.5
1839 Male, age 51, unknown 339.3
1895 Male, age 76, right hemisphere 331.6
Ventral tegmental area
nTPM: 398.1
1915 Female, age 42, unknown 443.9
2410 Female, age 72, unknown 430.4
2218 Male, age 76, both hemispheres 394.0
2223 Female, age 72, unknown 375.4
1942 Male, age 51, unknown 374.0
2021 Male, age 53, unknown 370.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 838.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 838.0
Samples: 139

Max nTPM: 1594.4
Min nTPM: 518.6
Std nTPM: 174.2
Median nTPM: 818.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1594.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1428.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1341.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1274.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1266.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1168.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1145.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1125.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1113.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1108.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1077.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 326.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 326.5
FF:10158-103A5 76 years, female 326.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 857.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 809.0
Samples: 4

Max nTPM: 1048.5
Min nTPM: 691.9
Sample A Female 1048.5
Sample B Female 722.5
Sample C Male 691.9
Sample D Male 773.2
Midbrain
nTPM: 858.0
Samples: 4

Max nTPM: 1438.0
Min nTPM: 576.8
Sample A Female 1438.0
Sample B Female 810.4
Sample C Male 606.6
Sample D Male 576.8
Periaqueductal gray
nTPM: 646.5
Samples: 3

Max nTPM: 676.6
Min nTPM: 620.6
Sample B Female 620.6
Sample C Male 676.6
Sample D Male 642.4
Superior colliculi
nTPM: 765.7
Samples: 4

Max nTPM: 993.6
Min nTPM: 631.8
Sample A Female 993.6
Sample B Female 631.8
Sample C Male 718.4
Sample D Male 719.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 223.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 223.6
Samples: 4

Max nTPM: 242.5
Min nTPM: 211.5
Sample A Male 242.5
Sample B Male 219.4
Sample C Female 211.5
Sample D Female 221.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
2245 Antisense, RP_040420_01_B03, Mouse strain C57BL/6J (56 days, male) 15.5
2246 Antisense, RP_040420_01_B03, Mouse strain C57BL/6J (56 days, male) 15.2

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