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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:885.1 nTPM
HPA Brain:469.3 nTPM
GTEx:885.1 nTPM
FANTOM5:334.4 Scaled Tags Per Million
Pig:1035.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

469.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 441.2
1981 Female, age 72, midline 583.0
2565 Male, age 75, midline 417.7
2816 Male, age 47, midline 403.9
2048 Male, age 55, midline 401.3
2194 Female, age 79, both hemispheres 400.3
Cervical spinal cord, dorsal horn
nTPM: 465.2
2173 Female, age 72, unknown 616.6
2296 Male, age 66, both hemispheres 539.7
2069 Male, age 47, both hemispheres 510.8
1877 Male, age 55, unknown 400.1
2721 Male, age 90, both hemispheres 378.3
2297 Male, age 75, both hemispheres 345.8
Cervical spinal cord, ventral horn
nTPM: 469.3
2098 Female, age 72, unknown 682.9
2809 Male, age 90, both hemispheres 480.7
2480 Male, age 75, both hemispheres 468.4
2295 Male, age 66, both hemispheres 438.0
2068 Male, age 55, unknown 410.3
2820 Female, age 79, both hemispheres 335.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

885.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 885.1
Samples: 159

Max nTPM: 1401.8
Min nTPM: 520.6
Std nTPM: 179.9
Median nTPM: 855.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1401.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1310.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1287.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1286.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1238.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1221.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1218.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1197.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1184.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1182.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1174.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1173.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1171.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1170.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1154.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1140.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1136.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1128.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1120.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1116.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1110.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1105.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1102.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1095.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1092.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1072.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1058.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1046.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1042.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1040.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1031.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1029.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1026.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1021.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1021.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1019.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1015.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1015.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1013.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1013.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1004.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1003.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 999.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 999.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 991.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 991.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 990.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 989.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 986.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 976.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 974.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 970.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 960.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 957.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 951.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 948.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 944.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 943.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 943.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 943.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 939.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 938.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 929.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 927.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 926.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 920.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 917.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 913.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 908.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 899.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 885.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 884.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 876.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 872.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 865.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 860.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 857.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 856.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 856.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 855.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 854.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 854.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 852.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 851.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 851.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 850.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 850.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 842.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 838.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 837.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 834.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 834.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 833.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 828.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 827.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 827.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 825.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 825.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 820.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 819.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 817.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 812.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 810.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 804.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 801.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 800.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 798.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 797.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 795.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 791.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 790.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 786.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 782.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 779.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 772.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 767.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 765.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 759.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 755.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 752.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 748.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 745.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 742.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 741.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 740.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 738.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 726.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 721.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 721.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 711.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 707.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 702.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 701.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 701.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 697.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 696.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 693.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 692.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 677.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 673.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 663.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 657.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 654.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 652.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 651.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 651.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 641.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 633.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 624.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 622.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 621.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 611.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 605.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 586.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 584.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 543.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 541.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 533.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 520.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

334.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 334.4
FF:10181-103D1 60 years, female 338.1
FF:10159-103A6 76 years, female 330.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1035.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 997.2
Samples: 4

Max nTPM: 1267.4
Min nTPM: 838.6
Sample A Female 838.6
Sample B Female 1007.6
Sample C Male 1267.4
Sample D Male 875.0
Ventral spinal cord
nTPM: 1035.1
Samples: 4

Max nTPM: 1132.1
Min nTPM: 944.8
Sample A Female 967.7
Sample B Female 944.8
Sample C Male 1095.8
Sample D Male 1132.1

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