MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:59.5 nTPM
GTEx:12.0 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:48.3 nTPM
Mouse:56.3 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.6
2586 Male, age 75, left hemisphere 51.0
2019 Male, age 18, unknown 50.8
1827 Male, age 72, unknown 48.7
1870 Female, age 42, unknown 46.2
2411 Female, age 72, unknown 44.3
2666 Male, age 74, left hemisphere 42.7
2828 Female, age 72, unknown 41.3
1833 Male, age 53, unknown 38.3
2219 Male, age 76, both hemispheres 37.2
1830 Male, age 51, unknown 36.1
Dorsal raphe nucleus
nTPM: 51.5
2298 Female, age 72, unknown 60.6
1828 Male, age 53, unknown 53.4
2016 Female, age 72, unknown 53.2
2047 Male, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 40.8
Inferior colliculus
nTPM: 55.5
2097 Female, age 72, unknown 67.1
1890 Male, age 53, unknown 59.8
1848 Female, age 42, unknown 50.3
2849 Male, age 72, unknown 44.9
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 59.5
1795 Male, age 51, unknown 66.6
1947 Male, age 18, unknown 62.5
2502 Female, age 75, unknown 49.3
Periaquaductal grey, dorsal
nTPM: 54.1
1840 Male, age 53, unknown 63.2
2850 Male, age 76, both hemispheres 58.8
2464 Female, age 72, unknown 48.3
1831 Male, age 72, unknown 46.2
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 59.5
2053 Male, age 18, unknown 58.5
2140 Male, age 76, both hemispheres 55.3
Pretectal area
nTPM: 58.5
1816 Male, age 51, unknown 70.0
2273 Male, age 74, both hemispheres 68.2
1817 Female, age 42, unknown 66.5
1944 Female, age 72, unknown 65.1
2007 Male, age 72, unknown 63.9
2667 Female, age 75, unknown 57.9
2825 Male, age 18, unknown 56.9
2224 Female, age 72, unknown 56.3
1815 Male, age 53, unknown 53.8
2407 Male, age 75, both hemispheres 44.4
2316 Male, age 76, right hemisphere 40.4
Red nucleus
nTPM: 47.7
1954 Female, age 42, unknown 59.7
1821 Female, age 72, unknown 58.7
1904 Male, age 53, unknown 49.4
2785 Male, age 18, unknown 48.4
1865 Male, age 51, unknown 48.2
2503 Female, age 72, unknown 47.4
2227 Male, age 72, unknown 46.7
2769 Male, age 72, unknown 46.3
2725 Female, age 75, unknown 45.2
2823 Male, age 76, right hemisphere 44.5
2588 Male, age 74, left hemisphere 39.5
2584 Male, age 75, left hemisphere 38.4
Substantia nigra
nTPM: 38.3
1889 Female, age 72, unknown 52.7
2590 Female, age 75, unknown 46.1
2583 Male, age 75, right hemisphere 42.9
2241 Male, age 72, unknown 40.9
2665 Male, age 74, both hemispheres 39.8
1916 Female, age 42, unknown 34.7
2409 Female, age 72, unknown 34.4
1851 Male, age 51, unknown 33.9
1941 Male, age 53, unknown 33.0
2699 Male, age 18, unknown 24.2
Superior colliculus
nTPM: 50.3
2261 Male, age 18, unknown 60.6
2087 Female, age 72, unknown 60.1
1995 Male, age 72, unknown 55.8
2668 Female, age 75, unknown 50.8
1796 Male, age 53, unknown 50.4
1913 Female, age 42, unknown 49.4
2587 Male, age 74, left hemisphere 47.1
2664 Male, age 75, both hemispheres 45.3
1839 Male, age 51, unknown 45.2
1895 Male, age 76, right hemisphere 38.5
Ventral tegmental area
nTPM: 40.0
2410 Female, age 72, unknown 46.9
2223 Female, age 72, unknown 41.9
1942 Male, age 51, unknown 41.7
2021 Male, age 53, unknown 38.8
2218 Male, age 76, both hemispheres 36.6
1915 Female, age 42, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 30.8
Min nTPM: 6.0
Std nTPM: 3.8
Median nTPM: 11.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 30.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 29.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 20.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 18.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 18.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.9
Samples: 4

Max nTPM: 33.1
Min nTPM: 22.2
Sample A Female 31.2
Sample B Female 22.2
Sample C Male 33.1
Sample D Male 25.2
Midbrain
nTPM: 48.3
Samples: 4

Max nTPM: 69.5
Min nTPM: 30.3
Sample A Female 30.3
Sample B Female 33.3
Sample C Male 69.5
Sample D Male 60.1
Periaqueductal gray
nTPM: 44.0
Samples: 3

Max nTPM: 50.0
Min nTPM: 40.9
Sample B Female 41.2
Sample C Male 50.0
Sample D Male 40.9
Superior colliculi
nTPM: 44.1
Samples: 4

Max nTPM: 56.4
Min nTPM: 27.5
Sample A Female 45.2
Sample B Female 27.5
Sample C Male 56.4
Sample D Male 47.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 62.5
Min nTPM: 50.7
Sample A Male 50.7
Sample B Male 55.0
Sample C Female 62.5
Sample D Female 57.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
79632275 Antisense, RP_071204_01_B10, Mouse strain C57BL/6J (56 days, male) 6.1
79556666 Antisense, RP_071204_01_B10, Mouse strain C57BL/6J (56 days, male) 4.9
237 Antisense, RP_Baylor_102676, Mouse strain C57BL/6J (56 days, male) 1.7
236 Antisense, RP_Baylor_102676, Mouse strain C57BL/6J (56 days, male) 0.3

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