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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:157.1 nTPM
HPA Brain:184.4 nTPM
GTEx:157.1 nTPM
FANTOM5:222.6 Scaled Tags Per Million
Pig:103.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.0
2048 Male, age 55, midline 138.3
1981 Female, age 72, midline 134.2
2816 Male, age 47, midline 131.2
2194 Female, age 79, both hemispheres 122.9
2565 Male, age 75, midline 118.3
Cervical spinal cord, dorsal horn
nTPM: 120.7
2173 Female, age 72, unknown 167.3
2296 Male, age 66, both hemispheres 144.2
2069 Male, age 47, both hemispheres 117.8
1877 Male, age 55, unknown 115.7
2297 Male, age 75, both hemispheres 92.5
2721 Male, age 90, both hemispheres 86.8
Cervical spinal cord, ventral horn
nTPM: 184.4
2480 Male, age 75, both hemispheres 278.8
2809 Male, age 90, both hemispheres 214.5
2295 Male, age 66, both hemispheres 207.3
2098 Female, age 72, unknown 141.0
2820 Female, age 79, both hemispheres 135.1
2068 Male, age 55, unknown 129.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.1
Samples: 159

Max nTPM: 472.5
Min nTPM: 57.9
Std nTPM: 67.6
Median nTPM: 140.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 472.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 373.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 372.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 327.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 310.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 307.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 305.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 298.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 289.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 283.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 283.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 282.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 273.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 263.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 262.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 260.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 256.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 250.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 244.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 230.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 225.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 222.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 217.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 216.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 214.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 213.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 210.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 209.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 206.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 204.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 198.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 197.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 197.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 196.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 191.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 190.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 189.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 189.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 187.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 184.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 184.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 184.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 179.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 178.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 176.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 172.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 171.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 170.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 170.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 168.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 168.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 167.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 167.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 159.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 158.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 157.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 157.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 156.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 153.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 151.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 151.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 150.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 149.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 149.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 149.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 147.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 147.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 146.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 145.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 144.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 143.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 143.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 142.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 142.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 140.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 140.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 139.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 139.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 139.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 138.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 138.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 138.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 137.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 136.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 129.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 128.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 126.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 125.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 125.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 124.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 124.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 124.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 123.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 123.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 122.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 122.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 122.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 122.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 122.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 118.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 116.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 115.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 115.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 114.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 113.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 113.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 112.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 109.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 108.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 108.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 108.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 106.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 105.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 105.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 104.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 104.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 101.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 100.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 98.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 98.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 98.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 97.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 94.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 92.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 91.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 89.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 88.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 86.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 86.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 85.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 84.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 84.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 81.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 79.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 78.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 77.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 72.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 62.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 57.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 222.6
FF:10159-103A6 76 years, female 266.9
FF:10181-103D1 60 years, female 178.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.4
Samples: 4

Max nTPM: 116.7
Min nTPM: 92.2
Sample A Female 92.2
Sample B Female 116.7
Sample C Male 92.7
Sample D Male 99.8
Ventral spinal cord
nTPM: 103.0
Samples: 4

Max nTPM: 130.5
Min nTPM: 78.7
Sample A Female 105.6
Sample B Female 97.3
Sample C Male 78.7
Sample D Male 130.5

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