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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1211.7 nTPM
HPA Brain:22.1 nTPM
GTEx:1211.7 nTPM
FANTOM5:97.8 Scaled Tags Per Million
Pig:244.0 nTPM
Mouse:633.7 nTPM
Allen mouse:17.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Sample id Sample description nTPM
Amygdala
nTPM: 13.2
2695 Female, age 67, right hemisphere 30.9
2814 Male, age 76, right hemisphere 10.7
1987 Female, age 91, left hemisphere 8.3
2514 Male, age 75, right hemisphere 8.3
2517 Female, age 94, left hemisphere 7.6
Basal amygdala
nTPM: 11.3
2827 Female, age 67, right hemisphere 29.7
2110 Male, age 80, left hemisphere 9.1
1955 Male, age 76, both hemispheres 8.8
2243 Female, age 91, right hemisphere 7.3
2685 Female, age 94, left hemisphere 7.2
2609 Male, age 75, right hemisphere 5.5
Central amygdala
nTPM: 19.2
2701 Female, age 91, right hemisphere 48.9
2239 Male, age 80, left hemisphere 17.4
1905 Male, age 76, both hemispheres 10.5
2826 Female, age 94, left hemisphere 10.0
2515 Male, age 75, right hemisphere 9.1
Corticomedial amygdala
nTPM: 11.9
2428 Male, age 75, right hemisphere 23.7
2535 Female, age 67, right hemisphere 15.2
2242 Female, age 91, right hemisphere 11.9
2240 Male, age 76, both hemispheres 8.2
2429 Female, age 94, left hemisphere 6.7
2829 Male, age 80, left hemisphere 5.5
Lateral amygdala
nTPM: 22.1
2830 Female, age 67, right hemisphere 74.7
2516 Male, age 75, right hemisphere 26.1
2255 Female, age 91, right hemisphere 11.9
2256 Male, age 80, left hemisphere 9.3
2534 Female, age 94, left hemisphere 6.3
1883 Male, age 76, both hemispheres 4.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1211.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1211.7
Samples: 152

Max nTPM: 3127.4
Min nTPM: 495.9
Std nTPM: 499.9
Median nTPM: 1084.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3127.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2905.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2837.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2771.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2630.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2555.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2370.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2300.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2259.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2075.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2027.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2015.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1986.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1906.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1889.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1854.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1842.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1838.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1789.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1706.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1704.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1674.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1666.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1661.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1660.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1659.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1640.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1607.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1580.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1503.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1467.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1453.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1451.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1447.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1439.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1426.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1425.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1395.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1377.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1368.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1365.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1363.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1351.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1351.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1334.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1308.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1304.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1300.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1286.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1263.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1263.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1256.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1252.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1211.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1205.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1185.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1182.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1178.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1172.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1170.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1159.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1158.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1157.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1154.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1148.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1148.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1141.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1138.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1116.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1111.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1109.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1101.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1091.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1091.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1090.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1086.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1082.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1075.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1074.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1073.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1070.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1062.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1061.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1046.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1044.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1041.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1040.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1039.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1028.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1028.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1012.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1009.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1005.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1005.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 991.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 987.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 984.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 965.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 964.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 963.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 955.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 953.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 951.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 946.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 943.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 921.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 906.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 906.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 905.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 897.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 896.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 890.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 882.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 875.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 867.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 862.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 858.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 854.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 851.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 849.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 846.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 846.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 842.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 841.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 841.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 837.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 816.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 805.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 804.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 784.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 783.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 777.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 771.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 742.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 734.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 728.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 712.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 687.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 685.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 676.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 655.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 654.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 647.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 645.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 639.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 635.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 628.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 619.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 605.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 582.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 548.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 495.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.8
FF:10151-102I7 76 years, female 97.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.0
Pig sample Sample description nTPM
Amygdala
nTPM: 244.0
Samples: 4

Max nTPM: 343.7
Min nTPM: 144.0
Sample A Female 343.7
Sample B Female 276.3
Sample C Male 212.0
Sample D Male 144.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

633.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 633.7
Samples: 4

Max nTPM: 673.2
Min nTPM: 589.0
Sample A Male 589.0
Sample B Male 642.6
Sample C Female 673.2
Sample D Female 630.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.9
68563128 Antisense, RP_050125_01_B08, Mouse strain C57BL/6J (56 days, male) 17.9

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