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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:777.3 nTPM
FANTOM5:105.2 Scaled Tags Per Million
Pig:248.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048746
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

777.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 777.3
Samples: 246

Max nTPM: 2043.5
Min nTPM: 385.9
Std nTPM: 252.1
Median nTPM: 715.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2043.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1811.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1640.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1604.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1593.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1528.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1526.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1344.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1312.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1289.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1279.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1263.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1262.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1211.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1210.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1200.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1165.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1134.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1133.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1113.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1111.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1109.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1094.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1082.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1081.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1081.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1080.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1079.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1078.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1071.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1057.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1057.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1044.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1034.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1025.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1019.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1001.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 993.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 990.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 987.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 982.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 980.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 975.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 961.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 960.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 958.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 955.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 943.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 943.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 942.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 936.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 936.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 928.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 927.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 922.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 916.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 916.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 915.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 912.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 910.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 904.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 903.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 901.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 897.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 891.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 885.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 883.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 880.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 865.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 861.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 852.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 850.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 849.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 847.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 840.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 833.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 833.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 831.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 829.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 829.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 828.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 826.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 825.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 822.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 821.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 811.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 810.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 809.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 805.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 803.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 803.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 799.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 794.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 790.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 787.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 785.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 782.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 781.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 773.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 773.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 767.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 766.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 765.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 763.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 757.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 754.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 754.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 750.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 748.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 747.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 745.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 742.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 739.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 738.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 738.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 737.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 736.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 732.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 730.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 727.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 724.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 723.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 717.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 714.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 711.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 709.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 702.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 701.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 701.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 694.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 692.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 690.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 685.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 684.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 682.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 680.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 679.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 677.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 677.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 676.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 674.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 673.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 672.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 672.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 670.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 670.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 669.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 668.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 663.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 662.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 662.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 660.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 660.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 657.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 654.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 653.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 651.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 651.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 650.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 649.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 648.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 648.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 648.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 646.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 646.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 645.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 643.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 642.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 640.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 637.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 637.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 633.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 632.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 624.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 619.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 617.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 612.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 611.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 611.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 610.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 603.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 603.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 601.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 599.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 598.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 596.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 591.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 587.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 586.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 586.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 584.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 579.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 579.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 577.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 577.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 577.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 576.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 575.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 573.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 573.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 569.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 569.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 568.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 567.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 567.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 566.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 564.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 563.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 562.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 562.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 559.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 557.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 557.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 555.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 553.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 552.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 552.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 551.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 550.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 548.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 545.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 543.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 536.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 534.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 533.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 526.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 524.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 522.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 520.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 518.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 513.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 500.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 500.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 490.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 487.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 486.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 484.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 484.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 469.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 465.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 441.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 426.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 403.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 388.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 388.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 385.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.2
FF:10164-103B2 76 years, female 105.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.3
Pig sample Sample description nTPM
Caudate
nTPM: 248.3
Samples: 4

Max nTPM: 266.1
Min nTPM: 214.0
Sample A Female 266.1
Sample B Female 257.7
Sample C Male 255.4
Sample D Male 214.0

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