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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1413.7 nTPM
HPA:327.1 nTPM
GTEx:1413.7 nTPM
FANTOM5:261.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048746
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

327.1
overview
Male, age 65
Small intestine sample 232
nTPM: 377.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 123.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 621.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 185.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1413.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1413.7
Samples: 187

Max nTPM: 2693.9
Min nTPM: 675.0
Std nTPM: 377.4
Median nTPM: 1376.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2693.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2689.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2681.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2475.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2312.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2311.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2252.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2242.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2165.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2151.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2120.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 2103.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2096.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2073.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2053.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1943.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1941.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1900.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1870.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1861.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1843.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1831.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1821.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1814.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1804.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1772.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1772.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1769.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1763.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1754.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1734.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1726.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1704.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1691.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1680.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1678.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1666.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1645.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1644.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1639.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1636.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1634.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1632.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1630.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1616.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1608.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1608.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1605.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1600.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1599.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1597.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1594.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1593.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1577.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1576.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1566.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1564.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1556.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1546.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1545.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1522.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1522.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1517.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1515.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1512.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1512.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1508.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1496.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1493.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1492.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1486.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1481.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1480.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1473.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1473.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1463.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1462.0
GTEX-1192X-2526-SM-59868 50-59 years, male 1455.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1452.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1448.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1444.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1428.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1424.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1421.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1419.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1396.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1393.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1390.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1385.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1383.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 1383.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1382.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1381.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1376.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1373.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1348.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1342.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1339.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1333.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1325.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1323.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1322.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1303.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1302.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1300.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1293.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1293.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1292.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1286.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1279.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1273.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1264.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1253.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1250.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1249.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1245.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1240.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1238.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1236.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1232.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1230.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1228.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1221.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1220.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1219.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1215.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1214.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1213.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1208.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1205.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1187.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1178.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1174.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1173.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1171.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1169.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1160.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1144.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1144.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1142.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1142.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1136.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1135.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1131.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1126.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1113.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1111.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1107.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1102.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1100.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1099.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1098.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1097.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1085.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1075.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1073.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1060.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1060.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1058.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1057.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1048.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1045.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1038.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1028.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1016.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1000.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 997.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 988.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 985.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 970.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 968.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 959.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 953.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 941.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 930.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 927.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 909.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 908.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 907.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 904.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 903.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 887.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 804.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 796.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 796.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 757.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 675.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

261.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 261.9
FF:10024-101D6 15,40,85 years, mixed 261.9

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