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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
319.2
nTPM
FANTOM5:
208.5
Scaled Tags Per Million
Pig:
71.4
nTPM
Allen mouse:
9.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
319.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 231.2
2188
Female, age 91, both hemispheres
281.5
2301
Female, age 85, both hemispheres
251.2
2090
Male, age 80, both hemispheres
234.9
1984
Male, age 76, both hemispheres
157.4
Dorsal cochlear nucleus nTPM: 242.1
2058
Male, age 76, both hemispheres
250.5
2802
Male, age 74, right hemisphere
247.4
2370
Male, age 61, both hemispheres
246.8
2187
Female, age 91, both hemispheres
245.6
2378
Male, age 80, both hemispheres
220.2
Dorsal tegmental nucleus nTPM: 221.7
2083
Male, age 80, both hemispheres
291.0
2326
Male, age 74, both hemispheres
219.4
1936
Male, age 76, left hemisphere
200.9
2358
Male, age 61, both hemispheres
175.5
Dorsolateral tegmental area nTPM: 216.5
2654
Male, age 80, both hemispheres
265.0
2751
Female, age 85, both hemispheres
247.2
2141
Male, age 76, both hemispheres
200.2
2337
Male, age 61, both hemispheres
194.3
2360
Male, age 74, both hemispheres
175.7
Kolliker-Fuse nucleus nTPM: 247.1
2793
Female, age 91, left hemisphere
353.0
2163
Male, age 80, both hemispheres
233.8
2315
Male, age 76, right hemisphere
154.5
Lateral lemniscal nuclei nTPM: 313.7
2320
Female, age 91, left hemisphere
347.1
2453
Male, age 74, right hemisphere
320.1
2169
Male, age 76, both hemispheres
310.8
2746
Female, age 85, left hemisphere
301.1
2036
Male, age 80, both hemispheres
289.4
Lateral parabrachial nucleus nTPM: 276.1
2790
Male, age 61, both hemispheres
283.7
2013
Male, age 80, both hemispheres
282.4
2792
Male, age 76, both hemispheres
269.6
2139
Female, age 85, right hemisphere
268.7
Lateral vestibular nucleus nTPM: 243.2
2184
Male, age 76, both hemispheres
266.0
2311
Male, age 80, both hemispheres
220.4
Locus coeruleus nTPM: 220.7
2162
Male, age 80, both hemispheres
261.4
2720
Male, age 74, both hemispheres
258.8
2317
Female, age 72, unknown
230.9
2123
Female, age 91, both hemispheres
207.1
2014
Male, age 55, unknown
200.4
2788
Male, age 74, unknown
194.8
1980
Male, age 76, both hemispheres
191.5
Medial parabrachial nucleus nTPM: 245.0
2786
Male, age 76, both hemispheres
265.4
2156
Male, age 61, both hemispheres
264.4
2854
Male, age 80, both hemispheres
244.5
2463
Female, age 85, right hemisphere
237.2
2170
Female, age 91, both hemispheres
213.6
Medial periolivary nuclei nTPM: 291.5
2081
Male, age 80, both hemispheres
309.1
2063
Male, age 76, both hemispheres
308.9
2458
Female, age 91, both hemispheres
307.9
2171
Female, age 85, both hemispheres
287.8
2791
Male, age 74, right hemisphere
243.6
Motor facial nucleus nTPM: 304.4
2327
Male, age 80, both hemispheres
330.4
2697
Female, age 85, both hemispheres
329.0
2062
Male, age 76, both hemispheres
311.6
2795
Female, age 91, both hemispheres
290.4
2365
Male, age 74, right hemisphere
288.9
2126
Male, age 61, both hemispheres
276.2
Motor trigeminal nucleus nTPM: 287.8
2560
Male, age 74, both hemispheres
317.8
2079
Male, age 80, both hemispheres
303.9
2321
Female, age 91, both hemispheres
292.7
2309
Male, age 76, both hemispheres
263.6
2335
Male, age 61, both hemispheres
261.1
Nuclei of the trapezoid body nTPM: 296.6
2166
Male, age 80, both hemispheres
322.4
2368
Female, age 91, both hemispheres
305.3
2159
Male, age 61, both hemispheres
303.9
2735
Female, age 85, both hemispheres
280.4
1983
Male, age 76, both hemispheres
271.2
Nucleus raphe magnus nTPM: 306.5
2459
Female, age 91, both hemispheres
365.7
2328
Male, age 80, both hemispheres
335.8
2051
Male, age 76, both hemispheres
299.8
2172
Female, age 85, both hemispheres
298.4
2455
Male, age 74, both hemispheres
283.3
2160
Male, age 61, both hemispheres
255.9
Paramedian reticular nucleus nTPM: 243.2
2057
Male, age 80, both hemispheres
270.6
2313
Male, age 61, both hemispheres
261.4
2050
Female, age 85, both hemispheres
261.2
2052
Male, age 76, both hemispheres
179.6
Pedunculopontine tegmental nucleus nTPM: 225.2
2334
Male, age 80, both hemispheres
246.7
1921
Female, age 85, both hemispheres
227.6
2338
Male, age 61, both hemispheres
201.1
Pontine nuclei nTPM: 309.6
2787
Female, age 85, both hemispheres
353.6
1968
Male, age 76, left hemisphere
334.1
2454
Male, age 74, left hemisphere
329.5
2115
Male, age 80, left hemisphere
329.2
1863
Male, age 55, unknown
304.3
2319
Female, age 91, both hemispheres
288.5
2109
Female, age 72, unknown
281.4
2727
Male, age 61, right hemisphere
256.0
Pontine raphe nucleus nTPM: 262.5
2122
Female, age 85, midline
275.7
2853
Male, age 76, midline
249.3
Posteroventral cochlear nucleus nTPM: 245.7
2070
Male, age 76, both hemispheres
296.5
2752
Female, age 85, both hemispheres
255.6
2135
Female, age 91, both hemispheres
250.1
2371
Male, age 61, both hemispheres
224.1
2341
Male, age 80, both hemispheres
202.4
Principal sensory trigeminal nucleus nTPM: 270.3
2367
Female, age 91, left hemisphere
318.6
2158
Male, age 61, both hemispheres
272.7
2008
Male, age 80, left hemisphere
263.7
2324
Male, age 76, both hemispheres
226.4
Reticular pontine nucleus, caudal nTPM: 319.2
2457
Female, age 91, both hemispheres
367.4
2332
Male, age 80, right hemisphere
352.3
2092
Male, age 76, both hemispheres
285.4
2559
Male, age 74, both hemispheres
271.7
Reticular pontine nucleus, oral nTPM: 292.1
2366
Female, age 91, both hemispheres
361.1
2361
Male, age 74, both hemispheres
292.0
2167
Male, age 76, both hemispheres
283.8
2012
Female, age 85, both hemispheres
270.8
1939
Male, age 80, both hemispheres
252.9
Reticulotegmental nucleus nTPM: 278.1
2452
Male, age 74, both hemispheres
309.0
2322
Female, age 91, both hemispheres
287.4
2333
Male, age 80, both hemispheres
286.4
2325
Male, age 76, both hemispheres
229.6
Spinal trigeminal nucleus, oral nTPM: 249.7
1978
Male, age 76, both hemispheres
299.6
2164
Male, age 80, both hemispheres
246.5
2737
Female, age 85, both hemispheres
203.2
Subcoeruleus area nTPM: 268.8
2089
Male, age 76, left hemisphere
324.8
2369
Female, age 85, left hemisphere
272.8
2451
Male, age 74, both hemispheres
259.9
2323
Female, age 91, left hemisphere
251.8
1958
Male, age 80, both hemispheres
234.7
Superior olive nTPM: 296.5
2329
Male, age 80, right hemisphere
331.1
2561
Female, age 91, both hemispheres
327.0
2020
Male, age 76, both hemispheres
297.5
1875
Female, age 85, both hemispheres
283.4
2364
Male, age 74, right hemisphere
243.6
Ventral periolivary nuclei nTPM: 275.8
2165
Male, age 80, both hemispheres
297.5
2130
Female, age 85, both hemispheres
286.6
2794
Female, age 91, left hemisphere
268.5
2023
Male, age 76, both hemispheres
250.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 292.4
2456
Female, age 91, both hemispheres
324.2
2161
Male, age 80, both hemispheres
308.9
1959
Male, age 76, both hemispheres
300.7
2449
Male, age 74, both hemispheres
300.1
2840
Female, age 85, both hemispheres
270.7
2359
Male, age 61, both hemispheres
250.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.4
Pig sample
Sample description
nTPM
Pons nTPM: 71.4
Samples: 4
Max nTPM: 88.6
Min nTPM: 57.8
Sample A
Female
88.6
Sample B
Female
57.8
Sample C
Male
68.2
Sample D
Male
70.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
