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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:157.1 nTPM
HPA Brain:86.0 nTPM
GTEx:157.1 nTPM
FANTOM5:486.4 Scaled Tags Per Million
Pig:42.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 81.0
1981 Female, age 72, midline 89.8
2048 Male, age 55, midline 86.2
2565 Male, age 75, midline 77.2
2194 Female, age 79, both hemispheres 75.9
2816 Male, age 47, midline 75.9
Cervical spinal cord, dorsal horn
nTPM: 86.0
2173 Female, age 72, unknown 99.8
2296 Male, age 66, both hemispheres 96.9
2069 Male, age 47, both hemispheres 82.0
2721 Male, age 90, both hemispheres 79.7
2297 Male, age 75, both hemispheres 79.1
1877 Male, age 55, unknown 78.7
Cervical spinal cord, ventral horn
nTPM: 77.8
2098 Female, age 72, unknown 97.5
2068 Male, age 55, unknown 79.3
2295 Male, age 66, both hemispheres 77.7
2480 Male, age 75, both hemispheres 73.8
2820 Female, age 79, both hemispheres 70.3
2809 Male, age 90, both hemispheres 68.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.1
Samples: 159

Max nTPM: 252.0
Min nTPM: 79.6
Std nTPM: 26.7
Median nTPM: 155.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 252.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 230.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 229.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 226.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 224.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 208.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 207.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 206.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 203.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 203.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 202.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 200.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 195.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 194.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 192.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 190.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 189.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 187.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 184.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 184.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 183.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 183.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 181.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 181.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 180.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 179.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 177.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 176.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 176.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 175.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 173.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 172.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 172.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 171.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 171.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 171.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 170.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 170.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 169.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 169.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 169.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 169.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 168.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 168.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 168.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 167.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 167.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 164.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 164.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 164.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 163.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 163.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 163.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 162.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 161.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 161.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 161.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 160.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 160.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 160.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 159.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 159.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 159.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 159.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 159.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 157.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 157.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 157.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 156.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 156.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 155.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 155.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 154.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 153.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 153.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 152.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 151.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 151.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 151.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 151.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 150.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 150.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 150.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 149.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 149.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 149.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 149.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 148.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 147.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 147.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 146.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 146.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 144.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 144.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 144.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 143.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 143.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 142.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 141.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 141.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 141.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 140.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 140.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 140.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 138.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 137.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 136.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 135.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 135.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 134.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 134.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 133.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 132.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 132.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 131.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 131.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 130.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 130.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 129.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 128.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 128.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 126.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 125.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 124.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 124.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 123.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 122.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 122.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 116.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 115.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 111.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 109.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 106.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 105.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 79.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

486.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 486.4
FF:10181-103D1 60 years, female 746.2
FF:10159-103A6 76 years, female 226.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 33.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 26.7
Sample A Female 38.2
Sample B Female 34.5
Sample C Male 32.7
Sample D Male 26.7
Ventral spinal cord
nTPM: 42.0
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.7
Sample A Female 46.3
Sample B Female 35.7
Sample C Male 46.9
Sample D Male 39.1

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