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  • PRNP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:220.6 nTPM
FANTOM5:611.4 Scaled Tags Per Million
Pig:247.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042754Antibody HPA043398
Glial cells LowNot detected
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 220.6
Samples: 246

Max nTPM: 486.0
Min nTPM: 93.6
Std nTPM: 54.8
Median nTPM: 211.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 486.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 419.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 392.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 380.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 369.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 365.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 361.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 344.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 335.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 332.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 331.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 325.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 321.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 321.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 310.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 306.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 304.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 303.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 303.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 300.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 300.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 299.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 298.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 296.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 294.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 289.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 289.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 288.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 287.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 283.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 281.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 278.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 278.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 277.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 276.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 275.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 274.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 270.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 269.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 267.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 265.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 264.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 262.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 259.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 259.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 258.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 258.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 257.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 257.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 255.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 254.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 253.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 253.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 252.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 251.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 251.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 249.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 249.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 248.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 247.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 247.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 247.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 246.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 246.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 245.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 245.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 245.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 243.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 242.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 242.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 241.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 241.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 240.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 240.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 239.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 239.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 238.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 238.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 237.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 237.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 236.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 236.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 235.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 235.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 234.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 232.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 232.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 231.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 231.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 231.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 230.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 228.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 228.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 227.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 227.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 225.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 225.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 225.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 223.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 223.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 223.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 222.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 221.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 221.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 220.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 219.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 218.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 217.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 217.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 217.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 217.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 217.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 215.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 215.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 215.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 215.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 213.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 213.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 213.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 212.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 212.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 212.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 212.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 211.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 211.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 210.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 209.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 209.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 208.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 208.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 207.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 207.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 206.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 206.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 205.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 205.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 205.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 204.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 204.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 204.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 203.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 203.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 203.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 203.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 202.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 202.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 201.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 201.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 200.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 199.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 199.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 198.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 198.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 198.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 198.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 197.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 197.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 195.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 195.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 194.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 193.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 192.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 192.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 191.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 190.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 190.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 190.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 189.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 188.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 188.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 186.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 186.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 186.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 186.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 186.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 185.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 185.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 185.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 185.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 185.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 183.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 183.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 183.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 182.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 182.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 182.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 182.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 182.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 181.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 181.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 181.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 180.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 180.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 179.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 179.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 178.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 178.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 177.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 176.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 175.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 174.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 174.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 174.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 174.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 173.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 173.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 173.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 172.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 171.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 170.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 170.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 170.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 170.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 170.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 169.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 168.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 167.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 167.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 167.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 166.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 165.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 164.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 163.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 163.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 159.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 159.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 156.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 156.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 152.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 151.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 151.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 151.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 151.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 150.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 146.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 145.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 145.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 142.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 138.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 136.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 135.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 134.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 131.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 128.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 124.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 93.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

611.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 611.4
FF:10164-103B2 76 years, female 611.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
Pig sample Sample description nTPM
Caudate
nTPM: 247.9
Samples: 4

Max nTPM: 294.6
Min nTPM: 215.3
Sample A Female 215.3
Sample B Female 233.3
Sample C Male 294.6
Sample D Male 248.4

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