MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.0 nTPM
HPA Brain:277.7 nTPM
GTEx:152.0 nTPM
FANTOM5:662.2 Scaled Tags Per Million
Pig:270.4 nTPM
Mouse:593.6 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 277.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.2
2019 Male, age 18, unknown 269.7
1827 Male, age 72, unknown 245.2
2411 Female, age 72, unknown 235.1
2666 Male, age 74, left hemisphere 229.9
2828 Female, age 72, unknown 229.5
1870 Female, age 42, unknown 226.9
2586 Male, age 75, left hemisphere 216.8
1830 Male, age 51, unknown 193.5
1833 Male, age 53, unknown 190.9
2219 Male, age 76, both hemispheres 184.9
Dorsal raphe nucleus
nTPM: 203.2
2298 Female, age 72, unknown 251.9
2016 Female, age 72, unknown 211.1
2750 Male, age 76, both hemispheres 200.3
1828 Male, age 53, unknown 186.2
2047 Male, age 72, unknown 166.3
Inferior colliculus
nTPM: 221.9
2097 Female, age 72, unknown 279.6
1848 Female, age 42, unknown 215.8
2849 Male, age 72, unknown 198.2
1890 Male, age 53, unknown 194.2
Median raphe nucleus
nTPM: 192.0
2220 Male, age 76, midline 192.0
Periaquaductal grey, anterior
nTPM: 253.7
2502 Female, age 75, unknown 271.2
1795 Male, age 51, unknown 264.3
1947 Male, age 18, unknown 225.7
Periaquaductal grey, dorsal
nTPM: 213.8
1840 Male, age 53, unknown 227.4
2464 Female, age 72, unknown 222.1
2850 Male, age 76, both hemispheres 211.1
1831 Male, age 72, unknown 194.4
Periaquaductal grey, lateral
nTPM: 221.9
2272 Male, age 74, both hemispheres 251.3
2053 Male, age 18, unknown 221.7
2140 Male, age 76, both hemispheres 192.8
Pretectal area
nTPM: 277.7
1816 Male, age 51, unknown 344.1
1817 Female, age 42, unknown 332.6
2007 Male, age 72, unknown 330.5
1944 Female, age 72, unknown 321.0
1815 Male, age 53, unknown 307.0
2273 Male, age 74, both hemispheres 297.0
2667 Female, age 75, unknown 281.7
2224 Female, age 72, unknown 245.8
2407 Male, age 75, both hemispheres 208.2
2825 Male, age 18, unknown 204.7
2316 Male, age 76, right hemisphere 182.1
Red nucleus
nTPM: 202.5
2785 Male, age 18, unknown 258.7
1821 Female, age 72, unknown 238.8
1865 Male, age 51, unknown 215.9
2503 Female, age 72, unknown 208.6
1954 Female, age 42, unknown 205.5
2725 Female, age 75, unknown 203.8
2227 Male, age 72, unknown 197.8
2769 Male, age 72, unknown 197.4
1904 Male, age 53, unknown 197.2
2823 Male, age 76, right hemisphere 180.2
2588 Male, age 74, left hemisphere 163.3
2584 Male, age 75, left hemisphere 162.9
Substantia nigra
nTPM: 206.6
1889 Female, age 72, unknown 274.4
1941 Male, age 53, unknown 240.5
2241 Male, age 72, unknown 228.9
1851 Male, age 51, unknown 225.1
2409 Female, age 72, unknown 224.7
1916 Female, age 42, unknown 209.6
2583 Male, age 75, right hemisphere 193.0
2590 Female, age 75, unknown 171.4
2699 Male, age 18, unknown 158.8
2665 Male, age 74, both hemispheres 139.6
Superior colliculus
nTPM: 249.9
2261 Male, age 18, unknown 298.0
2087 Female, age 72, unknown 290.2
1796 Male, age 53, unknown 262.5
2668 Female, age 75, unknown 260.0
1913 Female, age 42, unknown 256.4
2664 Male, age 75, both hemispheres 247.6
1995 Male, age 72, unknown 247.1
2587 Male, age 74, left hemisphere 228.6
1895 Male, age 76, right hemisphere 207.2
1839 Male, age 51, unknown 201.7
Ventral tegmental area
nTPM: 207.6
2410 Female, age 72, unknown 261.5
2223 Female, age 72, unknown 227.2
2021 Male, age 53, unknown 196.0
1915 Female, age 42, unknown 195.2
2218 Male, age 76, both hemispheres 183.0
1942 Male, age 51, unknown 182.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 152.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.0
Samples: 139

Max nTPM: 337.2
Min nTPM: 66.2
Std nTPM: 43.7
Median nTPM: 143.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 337.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 304.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 263.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 262.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 250.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 243.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 232.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 227.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 221.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 220.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 212.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 662.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 662.2
FF:10158-103A5 76 years, female 662.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 270.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 222.8
Samples: 4

Max nTPM: 269.4
Min nTPM: 175.2
Sample A Female 267.7
Sample B Female 175.2
Sample C Male 269.4
Sample D Male 179.0
Midbrain
nTPM: 269.6
Samples: 4

Max nTPM: 348.9
Min nTPM: 188.2
Sample A Female 270.9
Sample B Female 188.2
Sample C Male 348.9
Sample D Male 270.4
Periaqueductal gray
nTPM: 162.6
Samples: 3

Max nTPM: 192.5
Min nTPM: 146.0
Sample B Female 146.0
Sample C Male 192.5
Sample D Male 149.2
Superior colliculi
nTPM: 270.4
Samples: 4

Max nTPM: 343.7
Min nTPM: 193.6
Sample A Female 258.9
Sample B Female 193.6
Sample C Male 343.7
Sample D Male 285.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 593.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 593.6
Samples: 4

Max nTPM: 622.4
Min nTPM: 580.4
Sample A Male 622.4
Sample B Male 585.5
Sample C Female 580.4
Sample D Female 585.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
1405 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 13.6
1406 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 9.1

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