MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:208.2 nTPM
HPA Brain:234.4 nTPM
GTEx:208.2 nTPM
FANTOM5:520.3 Scaled Tags Per Million
Pig:156.0 nTPM
Mouse:582.8 nTPM
Allen mouse:14.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 234.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 191.3
1833 Male, age 53, unknown 256.5
2411 Female, age 72, unknown 254.3
1830 Male, age 51, unknown 252.2
1870 Female, age 42, unknown 221.9
2828 Female, age 72, unknown 193.8
2019 Male, age 18, unknown 186.5
2586 Male, age 75, left hemisphere 153.1
1827 Male, age 72, unknown 139.9
2666 Male, age 74, left hemisphere 132.7
2219 Male, age 76, both hemispheres 122.5
Dorsal raphe nucleus
nTPM: 136.8
2750 Male, age 76, both hemispheres 220.6
2016 Female, age 72, unknown 155.3
1828 Male, age 53, unknown 128.8
2298 Female, age 72, unknown 99.8
2047 Male, age 72, unknown 79.4
Inferior colliculus
nTPM: 120.2
2849 Male, age 72, unknown 138.6
1848 Female, age 42, unknown 133.0
1890 Male, age 53, unknown 109.9
2097 Female, age 72, unknown 99.3
Median raphe nucleus
nTPM: 97.4
2220 Male, age 76, midline 97.4
Periaquaductal grey, anterior
nTPM: 108.1
2502 Female, age 75, unknown 124.8
1947 Male, age 18, unknown 112.3
1795 Male, age 51, unknown 87.3
Periaquaductal grey, dorsal
nTPM: 100.0
2464 Female, age 72, unknown 155.9
1831 Male, age 72, unknown 101.0
2850 Male, age 76, both hemispheres 73.2
1840 Male, age 53, unknown 70.0
Periaquaductal grey, lateral
nTPM: 106.4
2053 Male, age 18, unknown 126.9
2272 Male, age 74, both hemispheres 116.6
2140 Male, age 76, both hemispheres 75.8
Pretectal area
nTPM: 131.9
2316 Male, age 76, right hemisphere 193.8
1815 Male, age 53, unknown 187.9
2667 Female, age 75, unknown 160.1
1817 Female, age 42, unknown 148.2
2407 Male, age 75, both hemispheres 147.0
2825 Male, age 18, unknown 134.8
2007 Male, age 72, unknown 115.2
2273 Male, age 74, both hemispheres 115.2
2224 Female, age 72, unknown 105.4
1816 Male, age 51, unknown 72.0
1944 Female, age 72, unknown 71.8
Red nucleus
nTPM: 234.4
1904 Male, age 53, unknown 319.1
1821 Female, age 72, unknown 287.7
1865 Male, age 51, unknown 274.8
2823 Male, age 76, right hemisphere 264.1
2769 Male, age 72, unknown 255.7
2227 Male, age 72, unknown 254.5
2785 Male, age 18, unknown 240.9
1954 Female, age 42, unknown 232.3
2503 Female, age 72, unknown 220.7
2588 Male, age 74, left hemisphere 204.9
2725 Female, age 75, unknown 131.1
2584 Male, age 75, left hemisphere 127.4
Substantia nigra
nTPM: 138.1
1851 Male, age 51, unknown 173.7
2583 Male, age 75, right hemisphere 170.6
2699 Male, age 18, unknown 163.6
2409 Female, age 72, unknown 162.6
2590 Female, age 75, unknown 147.0
1889 Female, age 72, unknown 139.1
2665 Male, age 74, both hemispheres 116.0
2241 Male, age 72, unknown 111.1
1916 Female, age 42, unknown 103.8
1941 Male, age 53, unknown 94.0
Superior colliculus
nTPM: 169.2
1995 Male, age 72, unknown 283.9
1913 Female, age 42, unknown 247.7
1895 Male, age 76, right hemisphere 212.7
1839 Male, age 51, unknown 184.9
2668 Female, age 75, unknown 168.7
2587 Male, age 74, left hemisphere 160.3
1796 Male, age 53, unknown 148.5
2664 Male, age 75, both hemispheres 110.5
2261 Male, age 18, unknown 88.1
2087 Female, age 72, unknown 86.5
Ventral tegmental area
nTPM: 158.6
2223 Female, age 72, unknown 231.8
2410 Female, age 72, unknown 208.5
1915 Female, age 42, unknown 141.1
1942 Male, age 51, unknown 130.3
2218 Male, age 76, both hemispheres 123.7
2021 Male, age 53, unknown 116.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 208.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.2
Samples: 139

Max nTPM: 714.9
Min nTPM: 70.9
Std nTPM: 118.0
Median nTPM: 177.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 714.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 696.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 579.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 575.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 560.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 497.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 434.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 418.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 396.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 391.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 389.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 520.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 520.3
FF:10158-103A5 76 years, female 520.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 156.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 139.7
Samples: 4

Max nTPM: 240.7
Min nTPM: 93.7
Sample A Female 123.6
Sample B Female 93.7
Sample C Male 100.9
Sample D Male 240.7
Midbrain
nTPM: 156.0
Samples: 4

Max nTPM: 401.0
Min nTPM: 51.5
Sample A Female 401.0
Sample B Female 115.0
Sample C Male 51.5
Sample D Male 56.5
Periaqueductal gray
nTPM: 71.5
Samples: 3

Max nTPM: 91.4
Min nTPM: 47.0
Sample B Female 76.2
Sample C Male 47.0
Sample D Male 91.4
Superior colliculi
nTPM: 96.6
Samples: 4

Max nTPM: 133.7
Min nTPM: 49.8
Sample A Female 97.9
Sample B Female 49.8
Sample C Male 105.1
Sample D Male 133.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 582.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 582.9
Samples: 4

Max nTPM: 689.3
Min nTPM: 499.6
Sample A Male 503.6
Sample B Male 499.6
Sample C Female 689.3
Sample D Female 638.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.7
386243 Antisense, RP_040804_01_D04, Mouse strain C57BL/6J (56 days, male) 14.7

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