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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:332.3 nTPM
HPA Brain:197.4 nTPM
GTEx:332.3 nTPM
FANTOM5:279.2 Scaled Tags Per Million
Pig:304.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 154.6
1981 Female, age 72, midline 197.6
2194 Female, age 79, both hemispheres 157.7
2048 Male, age 55, midline 144.5
2816 Male, age 47, midline 142.1
2565 Male, age 75, midline 131.1
Cervical spinal cord, dorsal horn
nTPM: 197.4
2296 Male, age 66, both hemispheres 291.7
2173 Female, age 72, unknown 257.9
2069 Male, age 47, both hemispheres 211.5
1877 Male, age 55, unknown 166.6
2297 Male, age 75, both hemispheres 133.0
2721 Male, age 90, both hemispheres 123.4
Cervical spinal cord, ventral horn
nTPM: 180.6
2098 Female, age 72, unknown 204.7
2068 Male, age 55, unknown 198.2
2295 Male, age 66, both hemispheres 176.8
2820 Female, age 79, both hemispheres 175.5
2480 Male, age 75, both hemispheres 165.7
2809 Male, age 90, both hemispheres 162.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 332.3
Samples: 159

Max nTPM: 705.0
Min nTPM: 82.5
Std nTPM: 119.6
Median nTPM: 320.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 705.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 629.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 612.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 577.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 558.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 549.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 542.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 533.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 533.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 533.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 525.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 525.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 520.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 514.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 507.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 502.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 502.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 495.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 488.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 484.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 471.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 466.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 464.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 460.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 460.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 446.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 444.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 444.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 441.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 438.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 431.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 431.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 428.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 423.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 422.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 422.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 421.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 416.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 415.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 414.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 414.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 411.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 408.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 408.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 407.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 405.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 405.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 392.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 390.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 388.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 385.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 382.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 380.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 378.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 377.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 376.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 372.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 369.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 368.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 359.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 357.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 357.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 356.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 351.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 350.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 347.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 345.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 343.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 343.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 343.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 340.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 339.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 337.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 331.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 330.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 329.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 329.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 324.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 322.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 320.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 319.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 317.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 317.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 313.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 311.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 311.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 308.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 308.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 307.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 306.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 306.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 299.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 299.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 299.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 297.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 297.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 292.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 291.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 290.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 290.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 290.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 284.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 281.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 280.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 277.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 275.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 274.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 274.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 273.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 273.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 269.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 263.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 263.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 260.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 258.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 255.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 249.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 246.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 243.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 243.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 241.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 238.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 237.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 234.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 234.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 233.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 230.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 228.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 222.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 221.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 218.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 214.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 211.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 210.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 210.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 202.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 200.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 198.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 196.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 193.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 191.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 186.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 182.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 180.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 173.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 147.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 142.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 141.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 134.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 131.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 119.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 101.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 90.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 82.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 279.2
FF:10181-103D1 60 years, female 404.2
FF:10159-103A6 76 years, female 154.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 304.0
Samples: 4

Max nTPM: 403.3
Min nTPM: 196.9
Sample A Female 196.9
Sample B Female 309.3
Sample C Male 403.3
Sample D Male 306.6
Ventral spinal cord
nTPM: 274.6
Samples: 4

Max nTPM: 397.9
Min nTPM: 215.8
Sample A Female 222.6
Sample B Female 215.8
Sample C Male 261.9
Sample D Male 397.9

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