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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
248.5
Sample id
Sample description
nTPM
Amygdala nTPM: 169.9
2814
Male, age 76, right hemisphere
365.6
1987
Female, age 91, left hemisphere
185.4
2517
Female, age 94, left hemisphere
143.9
2514
Male, age 75, right hemisphere
80.9
2695
Female, age 67, right hemisphere
74.0
Basal amygdala nTPM: 213.0
2243
Female, age 91, right hemisphere
296.9
1955
Male, age 76, both hemispheres
269.7
2685
Female, age 94, left hemisphere
248.8
2110
Male, age 80, left hemisphere
212.5
2827
Female, age 67, right hemisphere
160.7
2609
Male, age 75, right hemisphere
89.1
Central amygdala nTPM: 248.5
2826
Female, age 94, left hemisphere
352.7
1905
Male, age 76, both hemispheres
275.4
2701
Female, age 91, right hemisphere
251.3
2239
Male, age 80, left hemisphere
235.3
2515
Male, age 75, right hemisphere
127.9
Corticomedial amygdala nTPM: 203.6
2242
Female, age 91, right hemisphere
263.4
2829
Male, age 80, left hemisphere
246.8
2240
Male, age 76, both hemispheres
246.3
2429
Female, age 94, left hemisphere
204.4
2535
Female, age 67, right hemisphere
171.4
2428
Male, age 75, right hemisphere
89.6
Lateral amygdala nTPM: 216.0
2534
Female, age 94, left hemisphere
421.3
1883
Male, age 76, both hemispheres
285.4
2256
Male, age 80, left hemisphere
220.2
2255
Female, age 91, right hemisphere
210.1
2830
Female, age 67, right hemisphere
89.2
2516
Male, age 75, right hemisphere
69.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 246.0
Samples: 152
Max nTPM: 1454.2
Min nTPM: 28.2
Std nTPM: 183.1
Median nTPM: 204.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1454.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
802.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
753.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
669.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
651.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
599.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
575.5
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
575.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
569.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
551.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
521.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
520.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
502.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
476.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
475.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
474.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
470.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
436.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
427.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
423.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
423.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
402.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
400.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
386.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
385.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
377.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
376.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
375.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
373.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
369.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
354.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
352.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
349.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
347.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
334.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
331.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
327.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
319.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
316.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
306.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
303.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
301.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
295.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
294.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
289.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
289.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
286.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
282.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
279.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
272.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
271.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
270.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
266.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
263.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
262.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
259.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
259.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
255.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
251.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
251.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
248.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
247.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
245.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
242.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
240.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
227.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
227.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
217.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
216.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
214.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
212.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
212.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
211.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
209.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
207.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
206.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
202.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
197.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
189.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
187.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
181.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
181.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
179.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
179.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
179.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
175.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
173.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
171.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
167.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
166.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
165.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
160.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
159.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
158.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
157.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
155.3
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
152.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
149.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
147.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
145.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
144.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
143.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
140.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
139.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
139.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
136.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
136.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
136.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
134.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
134.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
133.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
129.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
128.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
127.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
126.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
125.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
125.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
123.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
117.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
117.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
116.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
111.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
104.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
104.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
104.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
102.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
98.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
96.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
94.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
93.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
88.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
88.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
85.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
84.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
82.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
81.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
75.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
71.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
70.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
69.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
68.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
68.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
65.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
56.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
51.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
49.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
49.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
48.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
45.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
39.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
36.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
28.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
525.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 525.9
Samples: 4
Max nTPM: 598.8
Min nTPM: 427.7
Sample A
Male
598.8
Sample B
Male
546.2
Sample C
Female
427.7
Sample D
Female
531.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
